PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009312-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family RAV
Protein Properties Length: 363aa    MW: 41517.5 Da    PI: 8.0042
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009312-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.91.4e-0956102254
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                         ++kGV     +g W A+I+       + +r++lg+f +++eAa a++ a+ kl+
  WALNUT_00009312-RA  56 KFKGVV-PQHNGHWGAQIYA------NhQRIWLGTFRSEKEAAMAYDSAAIKLR 102
                         789996.455899****999......44**********99************98 PP
2B386.32.7e-27180283185
                         EEEE-..-HHHHTT-EE--HHH.HTT...................---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHH CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...................ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFv 69 
                         f+k+ltpsdv+k++rlv+pkk+a ++                            +++l+++d++ +sW+++++y+++s+++v+t+GW++Fv
  WALNUT_00009312-RA 180 FLKELTPSDVGKLNRLVIPKKYAIRYfpyicesthvednkdhgdnC---GaavDDVELVFYDKQMKSWKFRYCYWRSSQSFVFTRGWNKFV 267
                         89*****************************999887766655552...0555899*********************************** PP

                         HHHT--TT-EEEEEE- CS
                  B3  70 kangLkegDfvvFkld 85 
                         k+++Lk++D+++F+  
  WALNUT_00009312-RA 268 KEKKLKANDIITFYTC 283
                         *************944 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.50E-2355113No hitNo description
Gene3DG3DSA:3.30.730.109.3E-1756111IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1556112IPR016177DNA-binding domain
SMARTSM003804.5E-2056117IPR001471AP2/ERF domain
PROSITE profilePS5103216.87156111IPR001471AP2/ERF domain
PfamPF008473.3E-556102IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.108.0E-32176286IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-25178281No hitNo description
SuperFamilySSF1019362.22E-25179284IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.857180303IPR003340B3 DNA binding domain
PfamPF023625.7E-25180284IPR003340B3 DNA binding domain
SMARTSM010196.3E-22180291IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MQSSSFAMEE DASSMISCAK MNVAAETSDS NNTIYTLQAA SNKRMRVNDS NTSFAKFKGV  60
VPQHNGHWGA QIYANHQRIW LGTFRSEKEA AMAYDSAAIK LRSGDSHRNF PWTEQTAQEP  120
KFQTHYSSEA VLNMIRDGSY PSKFSAFLRT SQSQSNEIGI SLKQTRIVHG DGQFSCSKLF  180
LKELTPSDVG KLNRLVIPKK YAIRYFPYIC ESTHVEDNKD HGDNCGAAVD DVELVFYDKQ  240
MKSWKFRYCY WRSSQSFVFT RGWNKFVKEK KLKANDIITF YTCESAGKAK DQGDQPFCLI  300
DIIYNNGEGT KNCLVEEMDD HEVQLELELN LGKRNIVSYK NISDHEDQYK RSNKEEKGRS  360
QVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-2617928013100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018825231.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6881e-104RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A2I4F0Q70.0A0A2I4F0Q7_JUGRE; AP2/ERF and B3 domain-containing transcription factor At1g50680-like
STRINGXP_009349427.11e-145(Pyrus x bretschneideri)
STRINGXP_009364153.11e-145(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-106RAV family protein