PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00009354-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

SRS

Protein Properties

Length: 439aa MW: 45100.7 Da PI: 8.0283

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00009354-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	220	5.1e-68	225	385	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 +gt++CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq + +as+ a +s a++ +k++r ++++++ s+t++s+ WALNUT_00009354-RA 225 TGTTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMGVSASAAAGSSGATSGAKKPRLI-TSQTTTNSHTSTSN 314 6899********************************************99999999999999999999999986.888899999* PP DUF702 94 aeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++++ +tss lP +v+++avf+cvrv++v+dge+++aYq++v+igGhvfkG+LydqG+e+ WALNUT_00009354-RA 315 TTPPRSYDTSSshqdvsfkeaLPGQVRAPAVFKCVRVTAVEDGEDQYAYQAVVNIGGHVFKGFLYDQGVES 385 ****9999******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.7E-62	227	384	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.4E-27	229	271	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.8E-30	336	383	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MTYLMASVVA TTRRLPSDSG AFADWAATSS SAAGRAAPDE LSLGFNAGPT AAGTSTGPTS 60 GMWSAAPSRQ INYGLASTEM GMVGLRDLFV VAPASSFHHN NHHHHHHQHD PIMSDPHSIN 120 GSNPATALGV GVGVGVIPLL TATPCLAPSN IGVDDENNML SNRNRGGGGI QLWQNNQHTQ 180 HGHYFKKPAI LDHGGSGNLV QTVGGGGGGG SGGAGMGGST TTSSTGTTTC QDCGNQAKKD 240 CSHRRCRTCC KSRGFDCATH VKSTWVPAAR RRERQLMGVS ASAAAGSSGA TSGAKKPRLI 300 TSQTTTNSHT STSNTTPPRS YDTSSSHQDV SFKEALPGQV RAPAVFKCVR VTAVEDGEDQ 360 YAYQAVVNIG GHVFKGFLYD QGVESRDGYP NISELHLGGG GDGGRNVVSS SAPILDPSDV 420 YAASGGGLLG GSSFGNPIN

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MTYLMASVVA TTRRLPSDSG AFADWAATSS SAAGRAAPDE LSLGFNAGPT AAGTSTGPTS  60
GMWSAAPSRQ INYGLASTEM GMVGLRDLFV VAPASSFHHN NHHHHHHQHD PIMSDPHSIN  120
GSNPATALGV GVGVGVIPLL TATPCLAPSN IGVDDENNML SNRNRGGGGI QLWQNNQHTQ  180
HGHYFKKPAI LDHGGSGNLV QTVGGGGGGG SGGAGMGGST TTSSTGTTTC QDCGNQAKKD  240
CSHRRCRTCC KSRGFDCATH VKSTWVPAAR RRERQLMGVS ASAAAGSSGA TSGAKKPRLI  300
TSQTTTNSHT STSNTTPPRS YDTSSSHQDV SFKEALPGQV RAPAVFKCVR VTAVEDGEDQ  360
YAYQAVVNIG GHVFKGFLYD QGVESRDGYP NISELHLGGG GDGGRNVVSS SAPILDPSDV  420
YAASGGGLLG GSSFGNPIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018825464.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	7e-89	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2I4F1D8	0.0	A0A2I4F1D8_JUGRE; protein LATERAL ROOT PRIMORDIUM 1
STRING	EOY32912	1e-160	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	5e-73	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]