PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009372-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 499aa    MW: 55513 Da    PI: 5.9981
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009372-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS436.91.5e-133464541361
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lLl+cA++v++g+le+a+ +L+++s l+spdgd+mqR+aayfteALa r+++ +++l kal++++ +    see+ ++klf+e+ P+l
  WALNUT_00009372-RA  46 LIQLLLTCANHVAAGSLENANIALEQISLLSSPDGDTMQRIAAYFTEALADRILKAWPGLHKALNATRIT--LISEEILVQKLFFELLPFL 134
                         689*************************************************************999987..79***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         k+s +++NqaI ea+ege++vHiiD+++ +++QW+aL+qaL++Rpegpp+lRiTgv++    +ke l +++ rL++ Ae+l++pf+fn  v
  WALNUT_00009372-RA 135 KVSLVLTNQAIIEAMEGEKMVHIIDLNAAEPVQWVALIQALSARPEGPPHLRITGVHQ----QKEVLDQMAYRLSEEAEKLDIPFQFNS-V 220
                         **********************************************************....9**************************.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll.....................................................desvsl 220
                         ++rl+dl++e+Lrvk+gEala+++vlqlh+ll                                                     ++++sl
  WALNUT_00009372-RA 221 VSRLDDLNFEKLRVKTGEALAISSVLQLHSLLasddellrkrspletknlngihlsralqinqntlgellekdlarhsqspdstsSSPMSL 311
                         *********************************************************************************9998444444 PP

                GRAS 221 es..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerh 309
                         +   + d++L+++++l Pk++v++eq+++hn+++++er+leal+ y+alfd+le+++pr+s er kvE++l+g+ei+n++acegaer+erh
  WALNUT_00009372-RA 312 HGsaKMDSFLNALWGLTPKLMVITEQDSNHNGSTLMERLLEALYSYAALFDCLESTMPRTSLERLKVEKMLFGEEIKNIIACEGAERKERH 402
                         43457899*********************************************************************************** PP

                GRAS 310 etlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                         e+lekW +rl+  GF++vpls++ + qa+ ll+ ++ dgy+++ee+g+++l 
  WALNUT_00009372-RA 403 EKLEKWIQRLDLGGFGNVPLSYYGMLQARQLLQGFGCDGYKIKEENGCVCLA 454
                         **************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.73920447IPR005202Transcription factor GRAS
PfamPF035145.3E-13146454IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MFQEEGSSSV TSSPLQLFSM MSLSPSIGSP YPWLRELKSE ERGLYLIQLL LTCANHVAAG  60
SLENANIALE QISLLSSPDG DTMQRIAAYF TEALADRILK AWPGLHKALN ATRITLISEE  120
ILVQKLFFEL LPFLKVSLVL TNQAIIEAME GEKMVHIIDL NAAEPVQWVA LIQALSARPE  180
GPPHLRITGV HQQKEVLDQM AYRLSEEAEK LDIPFQFNSV VSRLDDLNFE KLRVKTGEAL  240
AISSVLQLHS LLASDDELLR KRSPLETKNL NGIHLSRALQ INQNTLGELL EKDLARHSQS  300
PDSTSSSPMS LHGSAKMDSF LNALWGLTPK LMVITEQDSN HNGSTLMERL LEALYSYAAL  360
FDCLESTMPR TSLERLKVEK MLFGEEIKNI IACEGAERKE RHEKLEKWIQ RLDLGGFGNV  420
PLSYYGMLQA RQLLQGFGCD GYKIKEENGC VCLATQSPKG LVLPSACPSP GYPIKTECPI  480
NGARNLAWTS KIPPNKTKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-50344547366Protein SCARECROW
5b3h_A2e-50304542365Protein SCARECROW
5b3h_D2e-50304542365Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018825500.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2I4F1I30.0A0A2I4F1I3_JUGRE; scarecrow-like protein 3
STRINGEOY328060.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]