PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009584-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HSF
Protein Properties Length: 89aa    MW: 9977.46 Da    PI: 8.4773
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009584-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind301.3e-091874257
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-.HHHHHH..HTHHHHSTT--HHHHHHHH CS
        HSF_DNA-bind  2 Flkklyeiledeelkeliswsengnsfvvld.eeefak..kvLpkyFkhsnfaSFvRQL 57
                        Fl+kly +++++e+++++sws+ +nsf+v++  +++++  +  p+++k+ nf  Fv+QL
  WALNUT_00009584-RA 18 FLRKLYAMVDHPETNSVVSWSDGNNSFLVWKtGTRMSSppSFYPSTYKTLNF--FVQQL 74
                        9*****************************9445565522455666776666..67776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.3E-101274IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.03E-91568IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-61874IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MVDVNDAGSL TTETLLPFLR KLYAMVDHPE TNSVVSWSDG NNSFLVWKTG TRMSSPPSFY  60
PSTYKTLNFF VQQLCGLESR ASILLVVKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018829016.11e-18PREDICTED: heat stress transcription factor A-1b-like
RefseqXP_018829017.11e-18PREDICTED: heat stress transcription factor A-1b-like
TrEMBLA0A2I4FBJ63e-17A0A2I4FBJ6_JUGRE; heat stress transcription factor A-1b-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.16e-12heat shock transcription factor A1D