PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00009676-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Dof

Protein Properties

Length: 234aa MW: 24445.9 Da PI: 7.5008

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00009676-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.3	2.9e-37	23	80	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++ l+cprC st tkfCyynny+lsqPr+fCk+CrryWt+GG+lrnvPvGgg+rk+ + WALNUT_00009676-RA 23 TQPLPCPRCGSTSTKFCYYNNYNLSQPRHFCKSCRRYWTQGGTLRNVPVGGGTRKSIT 80 68899**************************************************854 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.5E-32	24	78	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.826	26	80	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	28	64	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-19	30	74	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MPSDEHKPVR VQQSFPHPPP PQTQPLPCPR CGSTSTKFCY YNNYNLSQPR HFCKSCRRYW 60 TQGGTLRNVP VGGGTRKSIT KRSRSTTSTS SSSSSSSSST VTSEAVHANP ISVLPEMVSH 120 DVSLNDNVAV GGGYVNGSFN FLLNSQGPGF MGPGGYGLGS MPGFDEMGFG LAGGGSWAFP 180 EVGDFGVGSG NGASVASAGY NTWQMTGTDE AGLNDGGDSF ASPDLAISTR PGHF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK354149	1e-41	AK354149.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1005F20.
GenBank	AK360934	1e-41	AK360934.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1128K17.
GenBank	AK377058	1e-41	AK377058.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3146P05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018846622.1	1e-171	PREDICTED: dof zinc finger protein DOF1.6-like
TrEMBL	A0A2I4GRV2	1e-170	A0A2I4GRV2_JUGRE; dof zinc finger protein DOF1.6-like
STRING	VIT_18s0001g11310.t01	6e-62	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21270.1	6e-25	DOF zinc finger protein 2