PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009691-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 233aa    MW: 25603.3 Da    PI: 8.4984
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009691-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.3e-183984147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+W++eEd  l ++v+++G+++W++I+r++  gR++k+c++rw + 
  WALNUT_00009691-RA 39 KGPWSAEEDRVLTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 84
                        79*****************************9.***********985 PP
2Myb_DNA-binding54.23.4e-1793135347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
  WALNUT_00009691-RA  93 PFSAAEDETILAAHARYGNR-WATIARLLP-GRTDNAVKNHWNST 135
                         79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.1953489IPR017930Myb domain
SuperFamilySSF466891.55E-3136132IPR009057Homeodomain-like
SMARTSM007175.5E-163887IPR001005SANT/Myb domain
PfamPF002494.3E-173984IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-244092IPR009057Homeodomain-like
CDDcd001678.83E-154183No hitNo description
SMARTSM007175.3E-1590138IPR001005SANT/Myb domain
PROSITE profilePS5129420.50791140IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.0E-2393139IPR009057Homeodomain-like
PfamPF002493.7E-1493135IPR001005SANT/Myb domain
CDDcd001671.01E-1193136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MERINRCSSN SSTSSDSSSS DSSLSSKTHR DCNKPDRIKG PWSAEEDRVL TRLVERYGPR  60
NWSLISRYIK GRSGKSCRLR WCNQLSPNVE HRPFSAAEDE TILAAHARYG NRWATIARLL  120
PGRTDNAVKN HWNSTLKRRV RGGQHMDGNG GGGGHDGCAS GSVQCMGMEE DDNPLTALTL  180
APPGIGSGRG ECSATEQRTE SMPAGVLDFM RDVIAREVRD YVSSTMSENS GFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-433514054159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-433514054159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018846633.11e-174PREDICTED: myb-related protein Myb4-like
SwissprotO231601e-57MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2I4GRW11e-172A0A2I4GRW1_JUGRE; myb-related protein Myb4-like
STRINGEMJ250262e-98(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50743256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.12e-58myb domain protein r1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]