PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009715-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRF
Protein Properties Length: 441aa    MW: 48108.4 Da    PI: 9.6614
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009715-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.33.7e-25123166144
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                         d+epgrCrRtDGKkWRCs+ v++++k+CErH+hrgr+rsrk++e
  WALNUT_00009715-RA 123 DPEPGRCRRTDGKKWRCSKHVVPDQKYCERHMHRGRQRSRKPVE 166
                         79***************************************998 PP
2WRC61.71.1e-19325366243
                 WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 
                          epgrCrRtDGKkWRCsr ++++ k+C  H+hrg +++  s+
  WALNUT_00009715-RA 325 LEPGRCRRTDGKKWRCSRHTVPDRKYCVQHMHRGAKKRVASV 366
                         59********************************99988776 PP
3QLQ41.73.5e-155790437
                 QLQ  4 TaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                        T+aQl++L  Q l+yK+L a++PvP +Ll++i+k
  WALNUT_00009715-RA 57 TPAQLHELQGQTLIYKHLEAGLPVPLHLLVPIWK 90
                        9*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.4E-65490IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.5025590IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.8E-105789IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.409123167IPR014977WRC domain
PfamPF088793.3E-21124166IPR014977WRC domain
PROSITE profilePS5166720.553324369IPR014977WRC domain
PfamPF088798.2E-18326365IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MIDEEESTME VEQERRGRGV KEAQPTWIKL GLGIGSNSAA AKNPVTEHGK PVAVVVTPAQ  60
LHELQGQTLI YKHLEAGLPV PLHLLVPIWK SVACFFGPAI YKLYPSFIGY FSPQGFDYKT  120
MMDPEPGRCR RTDGKKWRCS KHVVPDQKYC ERHMHRGRQR SRKPVEAFEI SSPSDSMPSD  180
KFGELNPNHA NSATVGLQLM TPSSHSISST TTTTSSNIGS KKYVSSDTIA TRTPIPAIAA  240
TMTTIPATAA TRATTLPTFT TNSINRIDHV SERKDVSGNP LIYNLTMKSN GNRVVSPGLG  300
FSPKSVLQDQ GCNSSCFGIR NGIELEPGRC RRTDGKKWRC SRHTVPDRKY CVQHMHRGAK  360
KRVASVPTAS SSVAIHRASP SLSTNVPNEA GLSSLNTDLS ISIQASSQLL QIDEKSTTSS  420
SSDTTITDTS ITANEYGYIS S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4497056e-42AM449705.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X253597.8, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018846676.10.0PREDICTED: growth-regulating factor 9
TrEMBLA0A2I4GS070.0A0A2I4GS07_JUGRE; growth-regulating factor 9
STRINGEOX961741e-104(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.12e-31growth-regulating factor 3