PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009823-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 558aa    MW: 63293.1 Da    PI: 8.1335
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009823-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024302325123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         y C+ Cg+ ++++ +Lk+H +  H
  WALNUT_00009823-RA 302 YICGVCGRKCKTNLDLKKHFKQlH 325
                         89*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF522664.49E-2527161IPR013830SGNH hydrolase-type esterase domain
Gene3DG3DSA:3.40.50.10106.4E-5222292IPR029060PIN domain-like
PROSITE profilePS5015710.575302330IPR007087Zinc finger, C2H2
PROSITE patternPS000280304325IPR007087Zinc finger, C2H2
CDDcd061672.06E-11314456No hitNo description
Gene3DG3DSA:3.40.50.10106.4E-5387452IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MKFLSIIFFV FVPNVGSVIS GGLKPDNIFL LAGQSNMAGR GGIYNDTKTN LLKWDGMFPP  60
QCNPTPNILT LSLNKTWDIA SEPLHKDIDH LKTCGVGPGM PFSNQILAER PNFGVIGLVP  120
CAIGGTKIEM WQKGTILYNQ LVDRAKAARE SVGGNIRALL WPTFPSSQSP FLSFPIVSIP  180
PSSQSIALRL WRTRRFASNG VVSSAASEID MVKNRHGVYT PKQKKVVVLW DLDNKPPRGP  240
PYQAAMALKQ VAQRFGDVID FAAYANRHAF IHLPQWVLEQ RRERKQLDIL ERKGLAIQSE  300
PYICGVCGRK CKTNLDLKKH FKQLHERERQ KKLNRMRSLK GKKRQRYKER FVSGNHKYNE  360
AERSLITPKL GYGLASELRR AGVFVKTVED KPQAADWAVK RQMQHSMSRG VDWLFLVSDD  420
SDFSEMLRRA RDANLGTVVV GDWDRALGRH ADLWVPWIQV ENGEVSEEDL VPKSQRRREE  480
DELFSVTSLD DNVANESHFL DDVVDELVAA RTSINGVKIS AFSEVVEEEA ERGGQWETEE  540
ENLENLLWDS EDEEDEYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2apj_A1e-391916115157Putative Esterase
2apj_B1e-391916115157Putative Esterase
2apj_C1e-391916115157Putative Esterase
2apj_D1e-391916115157Putative Esterase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018819894.10.0PREDICTED: uncharacterized protein LOC108990397
TrEMBLA0A2I4EKH60.0A0A2I4EKH6_JUGRE; uncharacterized protein LOC108990397
STRINGXP_008220254.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64413135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-161C2H2-like zinc finger protein