PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009824-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 149aa    MW: 16814.8 Da    PI: 9.1029
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009824-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.4e-182574255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  WALNUT_00009824-RA 25 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPVAAARAYDTAVFYLRG 74
                        69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.14E-212583IPR016177DNA-binding domain
SMARTSM003802.1E-352588IPR001471AP2/ERF domain
PROSITE profilePS5103222.1282582IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-302683IPR001471AP2/ERF domain
CDDcd000181.76E-262684No hitNo description
PRINTSPR003676.5E-122637IPR001471AP2/ERF domain
PfamPF008479.5E-112674IPR001471AP2/ERF domain
PRINTSPR003676.5E-126484IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MEGAACCSTS TSAEKRKQRQ NQEKPYRGIR MRKWGKWVAE IREPNKRSRI WLGSYTTPVA  60
AARAYDTAVF YLRGPSARLN FPDLIFQEDD DELRDISAAS IRKKATEVGA RVDALQTARA  120
LHASQPKPSR VSETPDLNEY PGPENSDED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-152482463ATERF1
3gcc_A2e-152482463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018819909.11e-107PREDICTED: ethylene-responsive transcription factor RAP2-1-like
SwissprotQ8LC302e-50RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A2I4EKJ11e-106A0A2I4EKJ1_JUGRE; ethylene-responsive transcription factor RAP2-1-like
STRINGXP_008452588.14e-76(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.18e-53related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]