PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00009845-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

FAR1

Protein Properties

Length: 113aa MW: 12621.3 Da PI: 4.575

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00009845-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.8	6.3e-07	52	103	2	54
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrt 54 +Y +Y+k+ GF v+k++ ++ ++g++ + + C + g+++++ + k r+t WALNUT_00009845-RA 52 YYMKYGKKKGFGVSKRNIRQD-DDGTVRWFCLACARGGTSKSTVANVMKPRQT 103 8***********9988776.8999*************999885555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.5E-5	52	103	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MLNLNVAMDA DIELSNNECD EVEIDKEIGS DETIEEPTVG MQFSSVEEVY AYYMKYGKKK 60 GFGVSKRNIR QDDDGTVRWF CLACARGGTS KSTVANVMKP RQTVKMGYTL SVS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018819862.1	6e-64	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A2I4EKD2	1e-62	A0A2I4EKD2_JUGRE; protein FAR-RED IMPAIRED RESPONSE 1-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13793	7	17