PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009898-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 224aa    MW: 24780.9 Da    PI: 7.8679
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009898-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51.1e-203685255
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa+++l+g
  WALNUT_00009898-RA 36 KFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAALSLRG 85
                        89*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.81E-223694IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-313694IPR001471AP2/ERF domain
SMARTSM003801.3E-363699IPR001471AP2/ERF domain
PROSITE profilePS5103223.7363693IPR001471AP2/ERF domain
CDDcd000181.83E-183693No hitNo description
PfamPF008471.6E-133685IPR001471AP2/ERF domain
PRINTSPR003672.8E-103748IPR001471AP2/ERF domain
PRINTSPR003672.8E-105975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MRRGRTADLA TVPGKTFCHE TNSNTHYKTT TIKDVKFRGV RKRPWGRFAA EIRDPWKKTR  60
VWLGTFDSAE DAARAYDAAA LSLRGPKAKI NFPLDALQLA QLPVREERRF SAVSGKFNNP  120
IQQPPARPTS SSMSSTVESF SGPRVVVPRV KAVPPPPVHP IPPDDCRSDC DSSSSVVDDN  180
DDDCVLTSSF RRVLPFDLNL PPPMDGEDFG LNDDEDIQAT ALCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-213394264ATERF1
3gcc_A1e-213394264ATERF1
5wx9_A2e-2136951474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018840773.11e-163PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotQ9SXS85e-39ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLA0A2I4GA311e-162A0A2I4GA31_JUGRE; ethylene-responsive transcription factor 3-like
STRINGGorai.002G092900.13e-52(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.12e-25ethylene responsive element binding factor 3