PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00009930-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

ZF-HD

Protein Properties

Length: 243aa MW: 26895.9 Da PI: 7.2028

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00009930-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	104	9.7e-33	54	108	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 + rY+eClkNhA+ +Ggha+DGCgEfmp+ g+egt +alkCaAC+CHRnFHR+e++ WALNUT_00009930-RA 54 RPRYRECLKNHAVGIGGHALDGCGEFMPA-GAEGTLDALKCAACNCHRNFHRKETD 108 679***********************9.999******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.0E-29	56	107	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.7E-30	56	106	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-21	56	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.576	57	106	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.9E-19	171	241	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.8E-32	171	242	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.6E-25	180	236	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MEFEEQEEHE EEMELDGTRY DSLGNSGRFK IQSSGGGGGG GPDLAVAQQQ QTKRPRYREC 60 LKNHAVGIGG HALDGCGEFM PAGAEGTLDA LKCAACNCHR NFHRKETDLH VGVGSADPYQ 120 QVPNHPQFSP YYRTPAGYLH VAPQLHRPLA LPSTSGGHSG DDQEEDVSNP SGGLGGSVSK 180 KRFRTKFTQE QKDRMLELAE RLGWRLQKHD EAVVQQFCNE TGVKRHVLKV WMHNNKHTLG 240 KKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-26	179	238	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018830269.1	0.0	PREDICTED: zinc-finger homeodomain protein 1-like
Swissprot	Q6YXH5	1e-85	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A2I4FF48	0.0	A0A2I4FF48_JUGRE; zinc-finger homeodomain protein 1-like
STRING	EMJ06891	1e-108	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-72	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]