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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | WALNUT_00009970-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 247aa MW: 27256.1 Da PI: 9.24 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 30.5 | 1.2e-09 | 113 | 173 | 2 | 66 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkakl 66
+Y++YAk+ GF v++ ++k++ +g+ + t C + g+ ++++++ +r+r++t+t+Ckak
WALNUT_00009970-RA 113 YYKRYAKQSGFGVKTFRTKRE-ADGSAKYLTIGCARGGTYHPSHSN---VSRPRPTTKTNCKAKT 173
8*************9998887.8999****************9988...999***********85 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 5.5E-7 | 113 | 173 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 247 aa Download sequence Send to blast |
MLVLFEVYIS HPTHFLSPPF PPLPFPSQPP RPYPTHLVIS PIPCIVQKAP SPASDGSPYL 60 LPLIFPLPAF SRKLLPIPVR ASSSPTVSDD DDERVEEPKS GMEFSTEKDL LAYYKRYAKQ 120 SGFGVKTFRT KREADGSAKY LTIGCARGGT YHPSHSNVSR PRPTTKTNCK AKTCRKIFND 180 EEQLHAGLES AGVAIVDNFV VGTQYSDVIQ PTPSGNEEKC AGTDHKSNGY KMGSLAHLPK 240 KYFAYLK |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF13793 | 7 | 17 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G43280.1 | 3e-08 | FAR1 family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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