PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00010073-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 460aa    MW: 52576.7 Da    PI: 7.3423
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00010073-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS295.81.1e-90794561373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lLl  A+av++++   a + L++l  ++s +g+++qR+++yf+ +Laarl+   s  y+ +   +t+    +e+++a++ ++ vsP++
  WALNUT_00010073-RA  79 LIHLLLITATAVDQNKVGSALENLNELYRNVSLSGNSLQRVVTYFADGLAARLLTRKSPFYDMIMKDPTD----EEKFFAFTDLYRVSPYY 165
                         689****************************************************99****999888886....788899999******** PP

                GRAS  92 kfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gv 174
                         +f+h+taNq I ea+e++     + +H+iDfd+s+G+QWp+L+q+L++++  ++  slRiTg+gs    s eel+et++rL  f + + ++
  WALNUT_00010073-RA 166 QFAHFTANQSIIEAFEEQeetnsRSLHVIDFDVSYGFQWPSLIQSLSEKAsnGNRISLRITGFGS----SLEELQETENRLVGFSKGFrNL 252
                         ****************9877777788*********************999744455*********....9****************9758* PP

                GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                         +fef+ l    l   +l ++r k++E+laVnlv+ + +l  + ++++    ++Lk+v sl+P +v++veqe +++  sFl rf+e+l+y++
  WALNUT_00010073-RA 253 NFEFQGL----LRGSSLVNIRKKKNETLAVNLVFYMSTLN-NYTKIS----DTLKTVHSLNPSIVILVEQEGNRSPRSFLSRFMESLHYFA 334
                         ******7....55566679999************999886.444444....59************************************** PP

                GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllr........kvk.. 345
                         a+fdsl+  lp es+er  +E+  lg++i++++   + +      e++e+W++r+e+  F  ++ s+k + qaklll+        +++  
  WALNUT_00010073-RA 335 AMFDSLDDCLPLESSERLGIEKNHLGKKIKSLLNYDKGDsNCPTYERMETWNARMESHDFAGIKSSSKSMIQAKLLLKirthycpvQFHge 425
                         *********************************976555277899*******************************974333222212212 PP

                GRAS 346 .sdgyrveee.sgslv.lgWkdrpLvsvSaW 373
                          s g+rv e+ +g ++ l W+dr L+++SaW
  WALNUT_00010073-RA 426 sSGGFRVSEKdDGGAIsLRWQDRCLLTASAW 456
                         23458887553555557************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.20353424IPR005202Transcription factor GRAS
PfamPF035143.9E-8879456IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MEMIEYRDEE ELLNLSLGIV TDSSVERTRK RKRKDASIPT HPFEGCDGKI FSLLQMREQM  60
LKLDRKRQAP VENGNGLNLI HLLLITATAV DQNKVGSALE NLNELYRNVS LSGNSLQRVV  120
TYFADGLAAR LLTRKSPFYD MIMKDPTDEE KFFAFTDLYR VSPYYQFAHF TANQSIIEAF  180
EEQEETNSRS LHVIDFDVSY GFQWPSLIQS LSEKASNGNR ISLRITGFGS SLEELQETEN  240
RLVGFSKGFR NLNFEFQGLL RGSSLVNIRK KKNETLAVNL VFYMSTLNNY TKISDTLKTV  300
HSLNPSIVIL VEQEGNRSPR SFLSRFMESL HYFAAMFDSL DDCLPLESSE RLGIEKNHLG  360
KKIKSLLNYD KGDSNCPTYE RMETWNARME SHDFAGIKSS SKSMIQAKLL LKIRTHYCPV  420
QFHGESSGGF RVSEKDDGGA ISLRWQDRCL LTASAWHPIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-508745827380Protein SCARECROW
5b3h_A1e-508745826379Protein SCARECROW
5b3h_D1e-508745826379Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12833RKRKRK
22834RKRKRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018825326.10.0PREDICTED: scarecrow-like protein 21
TrEMBLA0A2I4F0Z90.0A0A2I4F0Z9_JUGRE; scarecrow-like protein 21
STRINGEMJ002090.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62002952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-52RGA-like 2