PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00010075-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

C2H2

Protein Properties

Length: 530aa MW: 59031.8 Da PI: 6.3789

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00010075-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21	8.9e-07	269	290	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H WALNUT_00010075-RA 269 FCTICGKGFKRDANLRMHMRGH 290 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.25E-5	266	293	No hit	No description
SMART	SM00355	0.0026	268	290	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.03	268	295	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	6.9E-6	269	319	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	270	290	IPR007087	Zinc finger, C2H2
SMART	SM00355	53	317	350	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	22	355	377	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010044	Biological Process	response to aluminum ion
GO:0010447	Biological Process	response to acidic pH
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
MDHKENMWTK SFSSGNELLK NISTGQPSFP NFDSQQSQEK WEDPSMLDYS TRIEPPIKEF 60 KQHSEAQSSL PCNPNNQVKL PVQEDGQMNG SLQSSKIQDW DPRAMLNNLS FLEQKIHQLQ 120 DLVHLIVGRR GQVFERPDEL AAQQQQLITA DLTSIIVQLI STAGSLLPSV KHNTLSSTTT 180 VGQLGGVYLP SMVDLNGGFQ VQDNGESKVS DQSNPIDLAG NIGNEQIYHI EEHESKDEED 240 ADEGENLPPG SYEILQLEKE EILAPHTHFC TICGKGFKRD ANLRMHMRGH GDEYKTPAAL 300 AKPNKESSSE PILLKRYSCP YAGCKRNKDH KKFQPLKTIL CVKNHYKRTH CDKSYTCSRC 360 NAKKFSVIAD LKTHEKHCGK DKWLCSCGTT FSRKDKLFGH IALFQGHTPA ISIDEIKGQS 420 GPPDRGEGNE SINKVRSINF NFSSGAPSRS EVQNAVDVKA GIEDPASYFS PLNFDTCNFG 480 GFHEFPRPPF EDSESSFSFF IPGSSSNYTV PGSCNYTKKT GGESSSNNLE

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

MDHKENMWTK SFSSGNELLK NISTGQPSFP NFDSQQSQEK WEDPSMLDYS TRIEPPIKEF  60
KQHSEAQSSL PCNPNNQVKL PVQEDGQMNG SLQSSKIQDW DPRAMLNNLS FLEQKIHQLQ  120
DLVHLIVGRR GQVFERPDEL AAQQQQLITA DLTSIIVQLI STAGSLLPSV KHNTLSSTTT  180
VGQLGGVYLP SMVDLNGGFQ VQDNGESKVS DQSNPIDLAG NIGNEQIYHI EEHESKDEED  240
ADEGENLPPG SYEILQLEKE EILAPHTHFC TICGKGFKRD ANLRMHMRGH GDEYKTPAAL  300
AKPNKESSSE PILLKRYSCP YAGCKRNKDH KKFQPLKTIL CVKNHYKRTH CDKSYTCSRC  360
NAKKFSVIAD LKTHEKHCGK DKWLCSCGTT FSRKDKLFGH IALFQGHTPA ISIDEIKGQS  420
GPPDRGEGNE SINKVRSINF NFSSGAPSRS EVQNAVDVKA GIEDPASYFS PLNFDTCNFG  480
GFHEFPRPPF EDSESSFSFF IPGSSSNYTV PGSCNYTKKT GGESSSNNLE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269\|PubMed:17535918, ECO:0000269\|PubMed:18826429, ECO:0000269\|PubMed:19321711, ECO:0000269\|PubMed:23935008}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00196	ampDAP	Transfer from AT1G34370	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269\|PubMed:17535918}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018825336.1	0.0	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 isoform X1
Refseq	XP_018825337.1	0.0	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 isoform X1
Refseq	XP_018825338.1	0.0	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 isoform X1
Swissprot	Q9C8N5	0.0	STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBL	A0A2I4F109	0.0	A0A2I4F109_JUGRE; protein SENSITIVE TO PROTON RHIZOTOXICITY 1 isoform X1
STRING	XP_008237278.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5340	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	0.0	C2H2 family protein

Publications ? help Back to Top
Kobayashi Y, et al. Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions. Plant Physiol., 2013. 163(1): p. 180-92 [PMID:23839867] Yokosho K,Yamaji N,Ma JF Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench). Plant Cell Physiol., 2014. 55(12): p. 2077-91 [PMID:25273892] Geng X, et al. LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. Plant J., 2017. 90(3): p. 491-504 [PMID:28181322] Balzergue C, et al. Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation. Nat Commun, 2017. 8: p. 15300 [PMID:28504266] Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation. Front Plant Sci, 2017. 8: p. 822 [PMID:28567051] Jiang F, et al. Identification and characterization of suppressor mutants of stop1. BMC Plant Biol., 2017. 17(1): p. 128 [PMID:28738784] Daspute AA, et al. Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms. Front Plant Sci, 2017. 8: p. 1358 [PMID:28848571] Sharma A,Wai CM,Ming R,Yu Q Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. Genome Biol Evol, 2017. 9(9): p. 2170-2190 [PMID:28922793] Zhang Y, et al. The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis. Front Plant Sci, 2018. 9: p. 118 [PMID:29491872]