PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00010283-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 333aa    MW: 37826.1 Da    PI: 6.0714
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00010283-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.1e-20118167255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +grW+AeIrdp     r +r++lg+++taeeAa  +++a+ +l+g
  WALNUT_00010283-RA 118 RYRGVRQRP-WGRWAAEIRDPL----RrTRVWLGTYDTAEEAAMVYDRAAIRLRG 167
                         8********.**********73....45*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.14E-34117174No hitNo description
SMARTSM003803.5E-37118181IPR001471AP2/ERF domain
PROSITE profilePS5103224.052118175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-30118175IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-22118174IPR016177DNA-binding domain
PfamPF008472.8E-14118167IPR001471AP2/ERF domain
PRINTSPR003676.2E-11119130IPR001471AP2/ERF domain
PRINTSPR003676.2E-11141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSNLVKYTEH RHVTTKLVKS LARQFPLPNA GKPKIVRISV TDGNATDSSS GEEDDEKPVY  60
QYRVKRLVNE IRIEDFSNYA ALNAEPENTK PKPRPKHHKV EKKTPLKAQQ QCIPDIKRYR  120
GVRQRPWGRW AAEIRDPLRR TRVWLGTYDT AEEAAMVYDR AAIRLRGPDA LTNFVKPPFS  180
SPPTPHGPPS QQKADTESHS VSSTAPVSST QRQEIDVVGV SGYDSGKESH SPYSPTSVLR  240
FQPVELGTEA ESDWRPTKDQ SDGDYGWLDP LLLKDHFESE SPSQIFLDEM ILPETCLRKD  300
EYLGDISVGL EEDFGSYKWD VETYFQDSPE SLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21117174159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-21117174462ATERF1
3gcc_A1e-21117174462ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018827872.10.0PREDICTED: ethylene-responsive transcription factor CRF5-like
TrEMBLA0A2I4F8970.0A0A2I4F897_JUGRE; ethylene-responsive transcription factor CRF5-like
STRINGEOX957896e-92(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.19e-48cytokinin response factor 5