PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00010407-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

C2H2

Protein Properties

Length: 501aa MW: 52378.8 Da PI: 9.0894

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00010407-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H WALNUT_00010407-RA 63 FVCEICNKGFQRDQNLQLHRRGH 85 89*******************88 PP
2	zf-C2H2	15.7	4.1e-05	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ WALNUT_00010407-RA 139 WKCERCSKKYAVQSDWKAHMKTC 161 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.12E-7	62	85	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.6E-5	62	85	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	63	85	IPR007087	Zinc finger, C2H2
Pfam	PF12171	8.0E-5	63	85	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	63	85	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	65	85	IPR007087	Zinc finger, C2H2
SMART	SM00355	200	104	134	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.3E-5	127	160	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.12E-7	134	160	No hit	No description
SMART	SM00355	77	139	159	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MVELENSSPT VSTASREVSG YEQTTPLPAA PPLKKKRNLP GMPDPEAEVI ALSPKALLAT 60 NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTSKEVR KRVYVCPEPS CVHHSPGRAL 120 GDLTGIKKHF CRKHGEKKWK CERCSKKYAV QSDWKAHMKT CGTREYKCDC GTIFSRRDSF 180 ITHRAFCDAL AEESARTQPL EIPSSGPNTN AGHVVASSPP PPPPLTPTTT VASPALSIQS 240 SELSENPIGV SPATATATAA YLNATASTTA RSSSSSGAGV IASIFAPSTV TTITQQPSSF 300 SNVICAFSRS DCPSTANPIE PASLSLSTSL YLSNNGSSSI FATPNQDYRH YAPSPQPAMS 360 ATALLQKAAQ MGAAASNASL LRGFGLATSS SSGQDGSAAG WNGHVIKTEC SSPSMTEGLG 420 LRLPSGGGSS GLTDHVMMGG GSSSSPFGSQ PMTRDLLGLG RDGGGTSTGG LSALLTSFGS 480 GFDVAVTAAA ASLRNTQNNN S

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MVELENSSPT VSTASREVSG YEQTTPLPAA PPLKKKRNLP GMPDPEAEVI ALSPKALLAT  60
NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTSKEVR KRVYVCPEPS CVHHSPGRAL  120
GDLTGIKKHF CRKHGEKKWK CERCSKKYAV QSDWKAHMKT CGTREYKCDC GTIFSRRDSF  180
ITHRAFCDAL AEESARTQPL EIPSSGPNTN AGHVVASSPP PPPPLTPTTT VASPALSIQS  240
SELSENPIGV SPATATATAA YLNATASTTA RSSSSSGAGV IASIFAPSTV TTITQQPSSF  300
SNVICAFSRS DCPSTANPIE PASLSLSTSL YLSNNGSSSI FATPNQDYRH YAPSPQPAMS  360
ATALLQKAAQ MGAAASNASL LRGFGLATSS SSGQDGSAAG WNGHVIKTEC SSPSMTEGLG  420
LRLPSGGGSS GLTDHVMMGG GSSSSPFGSQ PMTRDLLGLG RDGGGTSTGG LSALLTSFGS  480
GFDVAVTAAA ASLRNTQNNN S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-36	135	200	3	68	Zinc finger protein JACKDAW
5b3h_F	2e-36	135	200	3	68	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018826693.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9SCQ6	1e-139	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A2I4F4W2	0.0	A0A2I4F4W2_JUGRE; protein indeterminate-domain 2-like
STRING	Gorai.009G203800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-110	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]