PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00010664-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family E2F/DP
Protein Properties Length: 419aa    MW: 47794.3 Da    PI: 9.6208
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00010664-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP733.3e-2373138171
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         rkeksL+ll+++fl+l++++   + +l+++a++L    v  +rRR YD++N+Le++++i+kk kn+++wkg
  WALNUT_00010664-RA  73 RKEKSLGLLCSNFLRLYSEEGVATFELDDAASKL---GV--ERRRMYDVVNILESIRIIAKKGKNQYSWKG 138
                         79*****************999************...**..****************************98 PP
2E2F_TDP63.53e-20198266164
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliekkek 64 
                         r++ksL++ltq+f+kl+ +s+ + + l+++a++L+ +       ++k+RR+YDi+NV++++n+iek +k
  WALNUT_00010664-RA 198 RRDKSLVILTQSFIKLFLCSDMEFILLDDAAQALLGDnhdttALRTKVRRLYDIANVFSSMNMIEKVKK 266
                         689**********************************9*9999999********************777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-2570139IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.18E-1473136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013728.4E-2773138IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.2E-2074138IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.6E-18195265IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-9197267IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.4E-17198304IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023197.8E-15200266IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.6E-18297305IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MRSYVKDAND PPPSLEAKPN KGPKPRPKNR ADFNLNSCEP NNHPPSQLYL WLSGAMSSLD  60
LQNPETRPPA YHRKEKSLGL LCSNFLRLYS EEGVATFELD DAASKLGVER RRMYDVVNIL  120
ESIRIIAKKG KNQYSWKGFG EVPRALEELK EDGMREKSNH SDFCNPVKVS KNIENGVPSS  180
LQNNWEARSA ASLRSDNRRD KSLVILTQSF IKLFLCSDME FILLDDAAQA LLGDNHDTTA  240
LRTKVRRLYD IANVFSSMNM IEKVKKDPLG DCSKFIFSYH FIIFLIDVQT HFPESRKPAF  300
RWLGWKEKPE NGSDTPSDLN ESKKRLFGID ITNDISKRNR VESSTNCINQ TVIDVPMHNR  360
HGDLGIVHDG IKLKQRSKHS SKGIEFGPFA PVNVSGLKDP ERRRVKEFQE KLTSTYRPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A9e-34732644222Transcription factor E2F8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018823084.10.0PREDICTED: E2F transcription factor-like E2FF isoform X1
RefseqXP_018823085.10.0PREDICTED: E2F transcription factor-like E2FF isoform X1
TrEMBLA0A2I4EUJ20.0A0A2I4EUJ2_JUGRE; E2F transcription factor-like E2FF isoform X1
STRINGVIT_14s0066g02370.t011e-116(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36683366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.15e-84DP-E2F-like protein 3