PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00010727-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

MYB_related

Protein Properties

Length: 173aa MW: 19736.1 Da PI: 6.1072

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00010727-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.3	7.4e-18	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +lv++++ +G g W+t a+ g++Rt+k+c++rw++yl WALNUT_00010727-RA 16 KGPWTMEEDMILVNYIANHGEGVWNTLAKSAGLKRTGKSCRLRWLNYL 63 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-21	9	66	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.741	11	67	IPR017930	Myb domain
SMART	SM00717	2.0E-12	15	65	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	9.22E-20	16	83	IPR009057	Homeodomain-like
Pfam	PF00249	5.1E-16	16	63	IPR001005	SANT/Myb domain
CDD	cd00167	4.63E-11	18	63	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.8E-7	67	92	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MDKKPCNSSQ DAEVRKGPWT MEEDMILVNY IANHGEGVWN TLAKSAGLKR TGKSCRLRWL 60 NYLRPDHLPG RTDNEIKNYW RTRIQKHIKQ AENLYGQSSS SVVMNDQTGS SISQVTAIGR 120 MDVDPLETYS PPSFQTNMDQ PIPAPHLPAP ESINDNYYWS MEDIWSMQLF GGD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018822969.1	1e-122	PREDICTED: myb-related protein 305-like isoform X1
Refseq	XP_018822970.1	1e-122	PREDICTED: myb-related protein 305-like isoform X2
Swissprot	P81391	2e-63	MYB05_ANTMA; Myb-related protein 305
TrEMBL	A0A2I4EU82	1e-121	A0A2I4EU82_JUGRE; myb-related protein 305-like isoform X1
TrEMBL	A0A2I4EUA1	1e-121	A0A2I4EUA1_JUGRE; myb-related protein 305-like isoform X2
STRING	XP_009618404.1	6e-74	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3305	34	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27810.1	5e-55	myb domain protein 21

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]