PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00010818-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 440aa    MW: 48767.5 Da    PI: 8.7241
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00010818-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19267317256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p++   r+r++lg+f+tae+Aa a++ a+  l+ge
  WALNUT_00010818-RA 267 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAAIAYDTAAYILRGE 317
                         59******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.68E-31266326No hitNo description
SMARTSM003801.1E-35267330IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-32267326IPR001471AP2/ERF domain
PROSITE profilePS5103222.708267324IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-22267325IPR016177DNA-binding domain
PRINTSPR003676.5E-11268279IPR001471AP2/ERF domain
PfamPF008475.1E-12268317IPR001471AP2/ERF domain
PRINTSPR003676.5E-11290306IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MDHQFPKMEI LMQKDQLSSY VHEGMTMGSH FFGDPIVWGA LTKSTTACHD HHGGSGGMKS  60
SPASPDRLFS SSDSTSSTEE ASDASWSHNI PGFSTKQDVI HDEHHQSPFV SGLNPDHPPG  120
ASASGAKESF IPVNFLGAFP KLTQAQVSQP SSPSSLSAKT RYPNLTLFLQ EPSLLDSSSR  180
IADNSPCKNI KCQSISSSSY PSFPMTQVAH IPSRRSNEWL NYSSKGLNYG SWLTTKTQPM  240
KYTGRRMQNH ELQKTNFSSV SSSQGKLYRG VRQRHWGKWV AEIRLPRNRT RVWLGTFDTA  300
EDAAIAYDTA AYILRGEYAQ LNFPDQKHQL KTNSLNGATA ALLEAKLRVI SQGISAKKKP  360
IESPQTPPKN NPSEDTKLQA LSQNSSRKER QFEWESKAGS EMIENKKTQE ALSDVEALQL  420
SRIPSLDMDM IWDALLVSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-21263334168ATERF1
3gcc_A5e-21263334168ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018837110.10.0PREDICTED: ethylene-responsive transcription factor ERF062-like
TrEMBLA0A2I4FZN40.0A0A2I4FZN4_JUGRE; ethylene-responsive transcription factor ERF062-like
STRINGcassava4.1_023072m1e-147(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.19e-51ERF family protein