PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00010824-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 244aa    MW: 27932.9 Da    PI: 6.5128
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00010824-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.30.00031921861344
                         HHHHHHHHHHHHCTSCC.C.................................................................TTS-STC CS
                 HLH  13 RdriNsafeeLrellPk.as..............................................................kapskKlsK 40 
                         Rd++N+++++L+ +l +  +                                                              k++++Kl+K
  WALNUT_00010824-RA  92 RDELNKCLQKLQLHLMEeEVedlfhscdidgsegiqfnefivllcliyllkgpssshttsrlgspqlevtfdtiievflfldKNGDGKLNK 182
                         89***************777*********************************************************************** PP

                         HHHH CS
                 HLH  41 aeiL 44 
                         ++++
  WALNUT_00010824-RA 183 SDMV 186
                         9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.238.102.8E-3170230IPR011992EF-hand domain pair
PROSITE profilePS5022213.50970105IPR002048EF-hand domain
SuperFamilySSF474731.59E-3172231IPR011992EF-hand domain pair
SMARTSM000540.003274102IPR002048EF-hand domain
CDDcd000513.29E-1375135No hitNo description
PROSITE patternPS0001808395IPR018247EF-Hand 1, calcium-binding site
PfamPF138332.9E-987135IPR002048EF-hand domain
PROSITE profilePS502229.381106141IPR002048EF-hand domain
SMARTSM000542110138IPR002048EF-hand domain
PROSITE profilePS502228.879160195IPR002048EF-hand domain
PfamPF134999.0E-11163227IPR002048EF-hand domain
SMARTSM000541.2164192IPR002048EF-hand domain
CDDcd000516.09E-7165224No hitNo description
PROSITE patternPS000180173185IPR018247EF-Hand 1, calcium-binding site
PROSITE profilePS5022210.19198233IPR002048EF-hand domain
SMARTSM000547.2202230IPR002048EF-hand domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005509Molecular Functioncalcium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MKGTPHPWLS LKSLSIKVGS MLCRCRSPNK YKRLDAKLER KMVEAKKGSS GHHNFKSIDS  60
IIMEFPQLRD GLKNIRAVFE QYDEDSSGTI DRDELNKCLQ KLQLHLMEEE VEDLFHSCDI  120
DGSEGIQFNE FIVLLCLIYL LKGPSSSHTT SRLGSPQLEV TFDTIIEVFL FLDKNGDGKL  180
NKSDMVKAFN DPSPREKSPS HIARTRFKEM DWDKNGKVSF REFLFAFINW VGIDTDEEVP  240
HTGT
Functional Description ? help Back to Top
Source Description
UniProtPotential calcium sensor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018837124.11e-180PREDICTED: probable calcium-binding protein CML22 isoform X1
SwissprotQ9LRN68e-87CML22_ARATH; Probable calcium-binding protein CML22
TrEMBLA0A2I4FZP41e-179A0A2I4FZP4_JUGRE; probable calcium-binding protein CML22 isoform X1
STRINGXP_009374596.11e-136(Pyrus x bretschneideri)
Publications ? help Back to Top
  1. McCormack E,Tsai YC,Braam J
    Handling calcium signaling: Arabidopsis CaMs and CMLs.
    Trends Plant Sci., 2005. 10(8): p. 383-9
    [PMID:16023399]