PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00011216-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TALE
Protein Properties Length: 836aa    MW: 90605.6 Da    PI: 7.2164
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00011216-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33e-095786151954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  WALNUT_00011216-RA 578 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 615
                         664459******************************88 PP
2BELL941.3e-304555091872
                BELL  18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +Vd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+
  WALNUT_00011216-RA 455 KVDRRYNHYCEQMQMVMNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAISAQL 509
                         7***************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.7E-69375507IPR006563POX domain
PfamPF075261.2E-40380506IPR006563POX domain
PROSITE profilePS5007112.568556619IPR001356Homeobox domain
SMARTSM003891.2E-9559623IPR001356Homeobox domain
CDDcd000864.53E-13559620No hitNo description
SuperFamilySSF466893.04E-17561626IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-28562625IPR009057Homeodomain-like
PfamPF059204.3E-18576615IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MIITPPLTPI FSHLKTHHSI SIPEKSNSAS SMSQDYHHGI FSFSNGFERS AVSHHEQQHQ  60
QHHHHHHHQQ AQQHHIAQQI RRDKLRVQGF DQSPPQLVGI DEEESEGLPV YETAGMLSEM  120
FNFPSGGATA ADLLEQPMAP SFRTPRPQPV ATGVANEWYG SNRQGMVVGL GPLGDAKNQN  180
SVNSRDNLAH QPPPPHHHHH AQISSINAAE SAAAMQLFLM NPQPRSPSPP PPSTSSTLHM  240
LLPNPSTSLH QGFAASGAAG GAFGQFTWVP DHSSHDGGNT GAQLNNASEI GGVVESQGLS  300
LSLSSSLQHL EAAKAEELRM GDGGSIFYYN QGAGGSSSST AQYYKNLGGH NQTLHLQGVA  360
HNNHQVHAGI GSSSLGMVNV LRNSKYVKAA QELLEEFCSV GRGQFKKNKF GKHNANPNSI  420
NPGNSTTSGA AGSSSSSKDL PPLSAADRIE HQRRKVDRRY NHYCEQMQMV MNSFDLVMGF  480
GAAVPYTALA QKAMSRHFRC LKDAISAQLK HSCELLGDKD GAGTSGITKG ETPRLKLLEQ  540
SLRQQRAFHQ MGMMEQEAWR PQRGLPERSV NILRAWLFEH FLHPYPSDAD KHLLARQTGL  600
SRNQVSNWFI NARVRLWKPM VEEMYQQEAK DVDQEDTDQE GSEGEIIRNQ NSNIIGLSTT  660
TTQTPMPTTI ATTPTSTTTA AASILPTATT ILTTTTPTGK RSDVNASEND PSLIAINRHC  720
FSENQAKLKG NSITITTTAE VSPPVSLCFP ATQDLSSEGL HQHRSSNMAT EDTCRRGSVL  780
AADFGTISGN ADNNIGSGSL IRFGTTAGDV SLTLGLRHAG NMPEKSSFSV RDFGGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16565623563Homeobox protein Meis2
3k2a_B2e-16565623563Homeobox protein Meis2
4xrm_A2e-16565623563Homeobox protein Meis2
4xrm_B2e-16565623563Homeobox protein Meis2
4xrs_A2e-16565622158Homeobox protein Meis1
4xrs_B2e-16565622158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018830219.10.0PREDICTED: BEL1-like homeodomain protein 2
RefseqXP_018830220.10.0PREDICTED: BEL1-like homeodomain protein 2
TrEMBLA0A2I4FF000.0A0A2I4FF00_JUGRE; BEL1-like homeodomain protein 2
STRINGVIT_04s0023g01020.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-151BEL1-like homeodomain 2