PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00011281-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WRKY
Protein Properties Length: 545aa    MW: 59962.6 Da    PI: 6.587
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00011281-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.72.3e-28264324159
                         ---SS-EEEEEEE--TT-S.S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgse.fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dg++WrKYGqK  kg++ +pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  WALNUT_00011281-RA 264 MNDGCQWRKYGQKIAKGNPsCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 324
                         58***************9747*********99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-30249326IPR003657WRKY domain
SuperFamilySSF1182902.22E-25257326IPR003657WRKY domain
PROSITE profilePS5081126.796259326IPR003657WRKY domain
SMARTSM007746.0E-35264325IPR003657WRKY domain
PfamPF031069.6E-26265324IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MGREKERDHR MEIDLSLKVD IADHEEQQAV EKEVDRAGVQ DKGKGYHDDE QAQAPNDHRQ  60
DQPGIHVRDA EEAAEATTGE VDDDASVSDQ VSLQENMRTK ELSLLRMEMN RVKEENKVLR  120
NVVEQTMKDY YDLQMKFATV QQNNQKKDPQ IFLSLNGNHG IDSQEPKTIL NTPDITKERP  180
PSPSHKDGLR ESELGLSLRL HTGAEEQRVE DKDQENKEEV KSFTTVQNKL QRSTDLTGIA  240
SHVASPVNRK ARVSVRARCE AATMNDGCQW RKYGQKIAKG NPSCPRAYYR CTVAPGCPVR  300
KQVQRCLEDM SILITTYEGT HNHPLPVGAT AMASTASAAA SFMLLDSSNP LSDAAASSFT  360
RVSLPNYGLH GSHMIHSSDL NPSNIRTMNP INIDPSKGIV LDLTSNSYDH HNHQYPAPQF  420
PMASSSYSAA RPGFPAWMHG KPSFHTGNIS LTNNNNLFPI PRSAIENKSL AENVTAIASD  480
PKFRVAVAAA ITSLINKESP NTITHPHVGT PFGPRDGDQS GSSGSSNWVL ESLSGNGKPL  540
GHSPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-20255326877Probable WRKY transcription factor 4
2lex_A5e-20255326877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018841999.10.0PREDICTED: probable WRKY transcription factor 9
SwissprotQ9C9F07e-79WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A2I4GDM20.0A0A2I4GDM2_JUGRE; probable WRKY transcription factor 9
STRINGEOX974001e-167(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-68WRKY DNA-binding protein 9