PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00011291-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Trihelix
Protein Properties Length: 430aa    MW: 50413.8 Da    PI: 7.4535
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00011291-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.81.7e-24111208186
            trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 
                         +Wt++ v++Li+++++++e++++++           +kk++W+ vs++m+erg ++sp+qC++k+++lnkryk+++++ +++ +++++++ 
  WALNUT_00011291-RA 111 KWTEKIVKLLITIVSYIGEDSSSDCitsgrrkssllQKKGKWKCVSEVMAERGHHISPQQCEDKFNDLNKRYKRLNDILGRGtSCKVVENP 201
                         7*********************99888899999999**********************************************669999999 PP

            trihelix  80 pyfdqle 86 
                         +++d ++
  WALNUT_00011291-RA 202 KLLDVMD 208
                         9998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.8E-21109233No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MEGKPSSGPH MMPGRPYGFQ NLQGSLQLRR EQNPHLYHQG SSVRPQTQDV FPLRLLNLQE  60
HDRPGTCSHN KDERGKNLAN DNNEMNCVEE GIDGHEDIGK EKKGSPWHRM KWTEKIVKLL  120
ITIVSYIGED SSSDCITSGR RKSSLLQKKG KWKCVSEVMA ERGHHISPQQ CEDKFNDLNK  180
RYKRLNDILG RGTSCKVVEN PKLLDVMDLP EKAKEDVKKI LSSRHLFYEE MCSYHNGNRL  240
YLPHDLGVQQ SLQLALSRKD SCEPHDLMQQ KTDDEDDKDW DAEADGQGEE YRDNGGTFVR  300
FEEVSTKRLK RRDRTEDMGF CNPLKFLENN RGLRSHPQKD YTNLNHVCTG SGKANELREQ  360
WMKFRSLQLE EQKLQIKAQM LELEKQHFEW QRMSWKHDRE LEKLRLENER MKLENEHVQL  420
ELKHKKILDD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018842129.10.0PREDICTED: uncharacterized protein LOC109007068
RefseqXP_018842130.10.0PREDICTED: uncharacterized protein LOC109007068
RefseqXP_018842131.10.0PREDICTED: uncharacterized protein LOC109007068
RefseqXP_018842132.10.0PREDICTED: uncharacterized protein LOC109007068
TrEMBLA0A2I4GE060.0A0A2I4GE06_JUGRE; uncharacterized protein LOC109007068
STRINGXP_010241711.11e-156(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50013157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-100sequence-specific DNA binding transcription factors