PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00011404-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

TCP

Protein Properties

Length: 193aa MW: 20864.6 Da PI: 7.0295

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00011404-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.1	4.7e-36	29	168	4	105
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...... 88 + r+ ++hTkv+gR+RR+R++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tg+++ +a+ +++++ s+ + WALNUT_00011404-RA 29 APPRTRDRHTKVNGRGRRIRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGSGTVPATISTSSATIPSTV----Hsvpcri 115 5689**********************************************************666663331111111111....0111222 PP TCP 89 ....................................kaaksaakskksqksaa 105 +aa+++a ++ ++ + WALNUT_00011404-RA 116 qplsvvsdgqgmftmappppqpscrldlcqplgmeySAATASAAGNGYRHMPF 168 23333333333444455555555555555555555544444444444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.5E-31	33	153	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.203	33	87	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MGSDMVVQFP DQHPNSLATT PTTTKTQVAP PRTRDRHTKV NGRGRRIRMP ALCAARIFQL 60 TRELGHRSDG ETIEWLLRQA EPSIIAATGS GTVPATISTS SATIPSTVHS VPCRIQPLSV 120 VSDGQGMFTM APPPPQPSCR LDLCQPLGME YSAATASAAG NGYRHMPFTA LLLQSTATEE 180 AEESQQEELL REQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018820554.1	1e-140	PREDICTED: transcription factor TCP11-like
Swissprot	Q9SJK7	6e-44	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A2I4EMD4	1e-139	A0A2I4EMD4_JUGRE; transcription factor TCP11-like
STRING	XP_004156285.1	9e-69	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	2e-41	TCP family protein