PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00011546-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family FAR1
Protein Properties Length: 217aa    MW: 24765.6 Da    PI: 8.4301
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00011546-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR133.81.1e-1053105255
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtr 55 
                         +Y +YAk+ GF vr+++s++s +++++ + t+vC ++g+++++ ++  k r+t 
  WALNUT_00011546-RA  53 YYMKYAKHKGFGVRRRNSRQS-DDEKVRWFTLVCVRQGTTKSQASNVLKPRQTD 105
                         9****************9999.7777****************999944444443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-853104IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVAGPFEMKI FTSNTHHNEY DEVMIDEEPD NDDGVEEPKV GMTFSNEEEV WSYYMKYAKH  60
KGFGVRRRNS RQSDDEKVRW FTLVCVRQGT TKSQASNVLK PRQTDRLEQL KLEYPDDDTR  120
EDTPTTASAT PIDGLTGKVL SLLVVRSKGK PTTKRRTHPI EKALKKSSTK RRLPTFEVKG  180
SHLSREDTPN YNVSGAQHEA PQTQTLNQSS MISKDNT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153157KRRTH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13793717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.19e-07FAR1-related sequence 10