PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00011576-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HSF
Protein Properties Length: 505aa    MW: 56917.8 Da    PI: 6.049
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00011576-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.11.4e-33181082101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+y++++d++++e++sws++++sfvv+++ ef++ +Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F k+kk+
  WALNUT_00011576-RA  18 FLIKTYDMVDDSTTDEIVSWSSDKTSFVVWNPPEFSRLLLPTFFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFVKDKKH 99 
                         9****************************************************************999.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                          l++i+r+k
  WALNUT_00011576-RA 100 RLKDIHRRK 108
                         *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.3E-3613101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-5714107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.72E-3315107IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-2918107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-181841IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-185668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MDEGPTTSGS GVGGPAPFLI KTYDMVDDST TDEIVSWSSD KTSFVVWNPP EFSRLLLPTF  60
FKHNNFSSFI RQLNTYGFRK IDPERWEFAN EDFVKDKKHR LKDIHRRKPI HSHSNSQGSV  120
VHPERAALND EIERLMRERA TLEANVLRSK QHRSAAKFHY EDLKQHVDKM EQRQETLLAS  180
LDKALQNPSF VEILVQKIES MGFSAYNKKR RLPHVDHSQP VVVNGFVDNH SSSRSGFGND  240
SHQFSNKVRL ELSPAVSDIN LVSHSAQSSY EDKACLQRKV SEEEPKGGQT RTEGFVFPHE  300
TLELSDAGTS FTQKMNSSLS QMVPTNEAPR PQHLQPSLDS NEEGDSHISF HLNLTLASSP  360
LQVDKSPYSA RMPQLAKEIG QSRDSKSKTN GEESDTTTAM RKYRADDTDL SSSQRAPSND  420
QAPAVASVRI NDVFWEQFLT ERPECLDNEE ASSTYRSNPN DEQEGGSSGL GMRGIRSGVD  480
DGREYDYEAL RRALRGAIAE PEELR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-18910717129Heat shock factor protein 1
5d5v_B2e-18910717129Heat shock factor protein 1
5d5v_D2e-18910717129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018844061.10.0PREDICTED: heat stress transcription factor A-5-like
SwissprotQ94BZ51e-140HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A2I4GJI70.0A0A2I4GJI7_JUGRE; heat stress transcription factor A-5-like
STRINGXP_008338589.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-143HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]