PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012011-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Dof
Protein Properties Length: 260aa    MW: 28831 Da    PI: 9.3983
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012011-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.94.6e-381877261
              zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                        ++++l+cprC+st tkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkk 
  WALNUT_00012011-RA 18 PQEHLNCPRCNSTITKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKY 77
                        68999****************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-261776IPR003851Zinc finger, Dof-type
PfamPF027012.8E-322076IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.5932276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEGEAPNTRP LTERRTRPQE HLNCPRCNST ITKFCYYNNY SLTQPRYFCK TCRRYWTEGG  60
SLRNVPVGGG SRKNKKYTPA ASTSNSKIPD LNPQSLSQIS SQNLINGAKK GHDLNLAFQT  120
YERYHGETQY VEVMPKIESD NRNQQVAGSA SSSTPLSALE LLRTGIASRG SNTFIPPPMI  180
DSSTLYSSGF PFQEFKPTPG TFSVDGVESR PYGVQENNGG KLLFPFGESK QISTTNEGEQ  240
KKGQGSSTGY WSSMLNGGYW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2022862e-43KT202286.1 Prunus dulcis dof zinc finger protein (dof) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018818339.10.0PREDICTED: dof zinc finger protein DOF2.5-like
SwissprotQ433859e-58DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A2I4EG130.0A0A2I4EG13_JUGRE; dof zinc finger protein DOF2.5-like
STRINGEOX956551e-105(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.42e-63Dof family protein