PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012059-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TALE
Protein Properties Length: 595aa    MW: 66210.6 Da    PI: 6.0133
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012059-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-093523891954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +e+  LAk++gLt +qV +WF N R +
  WALNUT_00012059-RA 352 FEHflHPYPKDSEKIMLAKETGLTRNQVANWFINARVR 389
                         664459******************************88 PP
2BELL129.11.5e-41215286172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +rq+lq+kk kLls+++eVd+rYkqy++q+q+v+ssF++vag+g+a+pYt+lAl++iSrhFrcL+dai++qi
  WALNUT_00012059-RA 215 QRQDLQNKKKKLLSMVDEVDRRYKQYYDQMQIVVSSFDMVAGYGAAEPYTALALQTISRHFRCLRDAITSQI 286
                         699********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.3E-60134284IPR006563POX domain
PfamPF075262.0E-50140283IPR006563POX domain
PROSITE profilePS5007112.179330393IPR001356Homeobox domain
SMARTSM003891.0E-9333397IPR001356Homeobox domain
CDDcd000867.67E-13333394No hitNo description
SuperFamilySSF466896.84E-17334399IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27336398IPR009057Homeodomain-like
PfamPF059201.8E-17350389IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MATYFPSPSN QRDVLLTPYP GDQKFASYSE PPFHPGNTMM YLNQASSVSY SDILSVSTLS  60
PVPLGNSVTG DGEQNTRCQG LALSLGTGMP SASVASLNGQ YPNPESYQNR DIVQSSFFGD  120
SIEALSNRYL YEPLGFAITL LNSKYLKAAQ QLLDEVANLW NALKQHRLNK HQNIPGIGLD  180
GSKEKDGRSN SQSVQMSSDP GDSTTNSFCE LSPAQRQDLQ NKKKKLLSMV DEVDRRYKQY  240
YDQMQIVVSS FDMVAGYGAA EPYTALALQT ISRHFRCLRD AITSQIQVTQ RSLGEQDTSP  300
YGQGGGVPRL RYVDQQFKQH SALQQFGVMR HAWRPQRGLP ETAVSILRAW LFEHFLHPYP  360
KDSEKIMLAK ETGLTRNQVA NWFINARVRL WKPMVEEIYK EEFGESELNS QSSPENASKP  420
PRDHSGEFEE RREELQDRVI PTIDDGVHTG QAHESNVNGK TARPGFGSSA HRDNISGSGT  480
IRVLGDQRPN VDDHSLYPDE TIPHRQVGGG SLMASAATFD MLELGSFIDG SQVSLVLELR  540
HCERDGFPIS GGTDLRGNDT ITSSAEPDSL DIQCPDPGKQ HHRFHNSHMV YDFVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A5e-17339396158Homeobox protein Meis1
4xrs_B5e-17339396158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018821045.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_018821046.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_018821047.10.0PREDICTED: BEL1-like homeodomain protein 7
TrEMBLA0A2I4ENR60.0A0A2I4ENR6_JUGRE; BEL1-like homeodomain protein 7
STRINGVIT_18s0001g13150.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-112BEL1-like homeodomain 7