PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012567-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 450aa    MW: 48329.6 Da    PI: 6.432
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012567-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20226275255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  WALNUT_00012567-RA 226 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 275
                         7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.8E-37226289IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-33226284IPR001471AP2/ERF domain
PfamPF008474.0E-14226275IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22226284IPR016177DNA-binding domain
PROSITE profilePS5103225.712226283IPR001471AP2/ERF domain
PRINTSPR003671.3E-11227238IPR001471AP2/ERF domain
CDDcd000181.01E-14234285No hitNo description
PRINTSPR003671.3E-11249265IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MCLLIKVANQ RGSGKSVRFP ARDSGGEDEL GRLYGQEELP EILPQTQETD RGIHHPGVTM  60
REPIFSDLSR TTTDMVSELR QVVSGQRGGG WGQHGTSMSG TAVTSSFGGV YSPSPSPPLS  120
AYSSSSGSGF ASASGFSSWS GQKRGREEEG VTQLIDSIPR GFRGSGVDHF RASRGGDPES  180
TSGVTVAEES ANIFATTAAA AATTVSAAAP SSENASFEET GERRRRYRGV RQRPWGKWAA  240
EIRDPHKAAR VWLGTFDTAE AAARAYDEAA LRFRGNRAKL NFPENVRVVP PLQNYSAAAT  300
ASISISDSQA SHLQQTPSPQ PFQPQFFQPQ PYQGPSEIYR DYLDYSQLLQ SSGDFHQGQQ  360
PTTLVEQMFY NSQLASRQSS LLTSSSLNTS SSSFAPSGSS SSASYPLFSN QQLGYFPPPG  420
NQNQSGGESS DLPPHPPSWS DSVHYPSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-22225286163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221226ERRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018848127.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1
TrEMBLA0A2I4GW610.0A0A2I4GW61_JUGRE; ethylene-responsive transcription factor ABR1-like isoform X1
STRINGPOPTR_0005s21690.14e-91(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.15e-16ERF family protein