PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012589-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Trihelix
Protein Properties Length: 437aa    MW: 50270.9 Da    PI: 6.6956
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012589-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.71e-25111205183
            trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 
                         +Wt+++v++Li+a+++++e+  +++           +kk++W+++sk+m++rg+++sp+qC++k+++lnkryk+++++ +++ ++ ++++ 
  WALNUT_00012589-RA 111 KWTDKMVRLLITAVSYIGEDAASDCggagrrkfvvlQKKGKWKSISKVMADRGYHVSPQQCEDKFNDLNKRYKRLNDMLGRGtSCHVVENP 201
                         7*********************99888999999999**********************************************557777777 PP

            trihelix  80 pyfd 83 
                         +++d
  WALNUT_00012589-RA 202 VLLD 205
                         7666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.3E-23109234No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MITGGASYGG FDLQGSMRVH HQAQHPHTIH HHQSRPGQGT SVHPSVHVGL PLSMGSIQNC  60
DQTIPVADFN SGERSKNSAS DEDEPSFTEE GVDGLNEGNR GKKGSTWHRV KWTDKMVRLL  120
ITAVSYIGED AASDCGGAGR RKFVVLQKKG KWKSISKVMA DRGYHVSPQQ CEDKFNDLNK  180
RYKRLNDMLG RGTSCHVVEN PVLLDVIDYL TEKEKDDVRK ILSSKQLFYE EMCSYHNGNR  240
LHLPHDPELQ SALHLALRSR YDHDNDEARR HQHDDLDEDD QDMETDYRDD FEENHASHVD  300
NRGIYGVLGS AKKLRQVRAH EDASFGNSLN SQDYNKITYS PSQIAQADMN QALPDSTRPA  360
WLQKQWIESR SLQLEEQKLH IQVEMLELEK QQLKWQRFSR KRDRELEKLR MENERMKLEN  420
EQMALELKRK EMSAGFN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018848176.10.0PREDICTED: uncharacterized protein LOC109011420
TrEMBLA0A2I4GW950.0A0A2I4GW95_JUGRE; uncharacterized protein LOC109011420
STRINGEMJ020630.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50013157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-175sequence-specific DNA binding transcription factors