PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012626-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 470aa    MW: 50358.7 Da    PI: 8.8078
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012626-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.33.9e-114672127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++ ++C +++rtG+C yG+rC+++H++
  WALNUT_00012626-RA 46 PGVPNCVYYMRTGFCGYGGRCRYNHPR 72
                        5789*********************96 PP
2zf-CCCH41.91.7e-1393117327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++lC+++++tGtCk+G++CkF+H++
  WALNUT_00012626-RA  93 EPLCQYYLKTGTCKFGASCKFHHPK 117
                         79*********************96 PP
3zf-CCCH37.63.7e-12139163327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +  C+++++tG+Ck+G +CkF+H++
  WALNUT_00012626-RA 139 EIDCSYYLKTGQCKFGVTCKFHHPQ 163
                         568********************97 PP
4zf-CCCH36.57.9e-12297320427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          +C++++rtG Ck+G++C+++H++
  WALNUT_00012626-RA 297 LECQYYMRTGDCKFGSSCRYHHPR 320
                         58********************96 PP
5zf-CCCH33.76.3e-11339364227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         +  +C f++++G+Ck+G++CkF H++
  WALNUT_00012626-RA 339 GVQPCAFYLQNGHCKFGPTCKFDHPM 364
                         6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.5354573IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-64572IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-84772IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-64974IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-45172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.88290118IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-790117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-693118IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-1193117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-695117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.54136164IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5136163IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9139163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5141163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4142162IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-5293320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.446293321IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9297320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6298322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4299320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14337365IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6337364IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6339368IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8339364IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5341363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MELYGRNQGR NNGSQPEWPS SGGDTGLEES MWRLGLGGSE SYPERPGVPN CVYYMRTGFC  60
GYGGRCRYNH PRDRAAVVEA VRATGEYPER VGEPLCQYYL KTGTCKFGAS CKFHHPKHGV  120
GSLSQAPLNI YGYPLRPGEI DCSYYLKTGQ CKFGVTCKFH HPQPVGTSMP ASAPQFYQPV  180
QSPSLPTPEP YGSASTSLSV PRHPLLPGSY MPGTYAPVLL SPGVVSIPGW SPYSAPVSPA  240
LSPGAQPAVG ATSLYGVTPL SSSTPALARP YLSLPSSANP TSSSQKEQAF PERPGELECQ  300
YYMRTGDCKF GSSCRYHHPR DRVSSGTVLS HIGLPLRPGV QPCAFYLQNG HCKFGPTCKF  360
DHPMGTMRYS PSASSLIDMP VAPYPVGSLL ATLAPSSTSS ELRPELIPGS KRESFSSRMP  420
SSGNTSNSVG LIFSQPGSVS LSEVQLSSQI SSTLSGVRST RQGGEIRRSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018843804.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2I4GIT20.0A0A2I4GIT2_JUGRE; zinc finger CCCH domain-containing protein 32-like
STRINGXP_010112757.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein