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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
WALNUT_00012917-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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| Family |
BBR-BPC |
| Protein Properties |
Length: 315aa MW: 35410.1 Da PI: 10.1314 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| WALNUT_00012917-RA | genome | JHU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 368 | 1.7e-112 | 1 | 315 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye..............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernka 73
mdd ++e r+k yy+ ++ ++l +++++ms+iaerd++irern+alsek++a+a+rd+a+ qrd+a+a+r+ a
WALNUT_00012917-RA 1 MDDGRQHEngRHKLdYYRgshspwnmvpqhqvKEpNALV--MNKKIMSIIAERDSAIRERNAALSEKNEALAARDEALRQRDEAFAQRDSA 89
676665555898887998999999999876653335666..99************************************************ PP
GAGA_bind 74 lverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekka 164
l+erdn+l+al++++n++ + p g ++ +g+k +++l + + +++ +++++e ++++a+pi+ a+ea +++++k+++++k +k
WALNUT_00012917-RA 90 LMERDNALAALQVRDNAM--NFPLGGGIQRGSKRMHHLSN-HLVTMAEAPYNTKEAQITDAFPITVIASEAVKSHQVKRTKENKAISSKPL 177
**************9985..568899999*******9988.6699********************99999999999998887777666666 PP
GAGA_bind 165 kkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaR 254
k+++k +++ ++ ++++ +d ++ ++e++s+d++ln v++Des++PvPvCsCtG++rqCYkWGnGGWqS+CCtt +S+yPLP+++++r+aR
WALNUT_00012917-RA 178 KSPRKGKKVGEDLNRQAASDgTKYRSEWDSQDVGLNLVTFDESSMPVPVCSCTGVPRQCYKWGNGGWQSSCCTTRLSMYPLPQMPNKRHAR 268
65555444444434444444488******************************************************************** PP
GAGA_bind 255 iagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
++grKmS+++f++lL++LaaeG+dls p+DLkd+WA+HGtn+++ti+
WALNUT_00012917-RA 269 VGGRKMSGSVFTRLLSRLAAEGHDLSLPLDLKDYWARHGTNRYITIK 315
**********************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 315 aa
Download sequence Send
to blast |
MDDGRQHENG RHKLDYYRGS HSPWNMVPQH QVKEPNALVM NKKIMSIIAE RDSAIRERNA 60
ALSEKNEALA ARDEALRQRD EAFAQRDSAL MERDNALAAL QVRDNAMNFP LGGGIQRGSK 120
RMHHLSNHLV TMAEAPYNTK EAQITDAFPI TVIASEAVKS HQVKRTKENK AISSKPLKSP 180
RKGKKVGEDL NRQAASDGTK YRSEWDSQDV GLNLVTFDES SMPVPVCSCT GVPRQCYKWG 240
NGGWQSSCCT TRLSMYPLPQ MPNKRHARVG GRKMSGSVFT RLLSRLAAEG HDLSLPLDLK 300
DYWARHGTNR YITIK
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
