PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012947-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TALE
Protein Properties Length: 682aa    MW: 74968.5 Da    PI: 5.9717
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012947-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.32.9e-094344711954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  WALNUT_00012947-RA 434 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 471
                         664459******************************88 PP
2BELL128.42.5e-41296367172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         e+q+lq+k +kLls+l+eVd+rYkqy++q+q+v+ssF++++g+g+akpYt+lAl++iSrhFrcL+dai++qi
  WALNUT_00012947-RA 296 EKQDLQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIVGCGAAKPYTALALQTISRHFRCLRDAITGQI 367
                         6899*******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.2E-59210365IPR006563POX domain
PfamPF075264.2E-49216364IPR006563POX domain
PROSITE profilePS5007112.163412475IPR001356Homeobox domain
SMARTSM003891.0E-9415479IPR001356Homeobox domain
CDDcd000864.48E-13415476No hitNo description
SuperFamilySSF466892.57E-17416482IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-29418481IPR009057Homeodomain-like
PfamPF059204.6E-18432471IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MATFYTSSSN QRDTAPILYV REHLPSSFAE APVQAPVLHG NMMMYMDSGP YSDSLAENSQ  60
QQNNCMDPSL GASNSSPQQR EILSNLGGSR LVEHDFNAWR EGRNEILVTH PMGSAASILH  120
SGQNLQGQGL SLSLSTQIPS EFHMPSIPYQ NPNSGFASLL SPNSSVAGDC ADRNDSSRDE  180
PLRSADYLPT SFTGGNQDLN KGDLSPFGMS RIVRTIPNSK YLKAAQQLLD EVVNVRKALK  240
QPDVAKNVGT QEHPITSPME SDGGTKNETA MPPTGGVPPY PQESACNSPH DLSHAEKQDL  300
QNKLTKLLSM LDEVDRRYKQ YYHQMQIVVS SFDVIVGCGA AKPYTALALQ TISRHFRCLR  360
DAITGQIQVA RKSLGEQDSS GSSKGVGITR LRYVDQQLRQ QRTLQQLGMM QQHAWRPQRG  420
LPESSVSILR AWLFEHFLHP YPKDSDKIML ARQTGLTRSQ VSNWFINARV RLWKPMVEEM  480
YKEEIGDAEM DSNSSSDNAG KATKGNDGTF EDRGEDFQQS MSSTATERCS TSQLIDSKPD  540
GVPDVQMAGS PRLVNYQDSE NEYGLVKRRE EQRPSMDGCS LFPDAASERF MAAAAAAYHM  600
SELERFGGGS GVSLTLGLQH CEGGSLPISG VAHHSFISMG GDQIYNAPPS SVGTETADFE  660
CMNPGNQQHR FSSSHLLHDF VV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-16421478158Homeobox protein Meis1
4xrs_B3e-16421478158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018815324.10.0PREDICTED: BEL1-like homeodomain protein 6
TrEMBLA0A2I4E7F40.0A0A2I4E7F4_JUGRE; BEL1-like homeodomain protein 6
STRINGEOX979220.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-130BEL1-like homeodomain 6