PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00013083-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

TCP

Protein Properties

Length: 522aa MW: 55060.3 Da PI: 7.5021

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00013083-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.6	1.5e-40	151	254	2	111
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++ ++s +ss+s+ s++ WALNUT_00013083-RA 151 TPVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANFStLNVSLRSSGSTLSAP--- 238 6779*****************************************************************9998888888888855444... PP TCP 92 ksaakskksqksaasalnla 111 +sk++++s + al+la WALNUT_00013083-RA 239 ----PSKSASHSFHGALALA 254 ....2222222222233333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-38	156	279	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.737	157	211	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence Send to blast
MELTDLQSNK QTNTTTHHHH HQQQHHHHHQ HHHPQQQQNQ STSSHLVVPF DGRSGGPFMG 60 SISIQAGLST HAGASTSSSS SPLPSSSSSS STSTSTALDA SLAIATRSDS HPASTRSAPL 120 LDSIKKDPQQ QLSIVPIATT TTTTTATTTP TPVKRSTKDR HTKVDGRGRR IRMPATCAAR 180 VFQLTRELGH KSDGETIEWL LQQAEPAIIA TTGTGTIPAN FSTLNVSLRS SGSTLSAPPS 240 KSASHSFHGA LALAHHPYHE EGFAHPAFLG FHQQQQQQHL MTADQIGEAL PSGGGSGSGG 300 GGESGGGGDS TENYMRKRFR EDLFKEDTHT QPQGGESGGG ESNSPSGNKA FKSGLQLPKA 360 QVQEAGSSGL LRPSNILPAT FWMLPVNAGS GGPSVAITTS GAGPSESHMW TFPTAPTASG 420 NTLQAPLHFM PRFNLPGSSL EFQGSRASPL QLGSMLMQQQ PSQHLGLGVS ESNLGMLAAL 480 NAYSRSGGLN MNSDQHNHPL DQHHQHQRQA NDSGDEGPNS SQ

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence Send to blast

MELTDLQSNK QTNTTTHHHH HQQQHHHHHQ HHHPQQQQNQ STSSHLVVPF DGRSGGPFMG  60
SISIQAGLST HAGASTSSSS SPLPSSSSSS STSTSTALDA SLAIATRSDS HPASTRSAPL  120
LDSIKKDPQQ QLSIVPIATT TTTTTATTTP TPVKRSTKDR HTKVDGRGRR IRMPATCAAR  180
VFQLTRELGH KSDGETIEWL LQQAEPAIIA TTGTGTIPAN FSTLNVSLRS SGSTLSAPPS  240
KSASHSFHGA LALAHHPYHE EGFAHPAFLG FHQQQQQQHL MTADQIGEAL PSGGGSGSGG  300
GGESGGGGDS TENYMRKRFR EDLFKEDTHT QPQGGESGGG ESNSPSGNKA FKSGLQLPKA  360
QVQEAGSSGL LRPSNILPAT FWMLPVNAGS GGPSVAITTS GAGPSESHMW TFPTAPTASG  420
NTLQAPLHFM PRFNLPGSSL EFQGSRASPL QLGSMLMQQQ PSQHLGLGVS ESNLGMLAAL  480
NAYSRSGGLN MNSDQHNHPL DQHHQHQRQA NDSGDEGPNS SQ

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018835544.1	0.0	PREDICTED: transcription factor TCP8-like
Swissprot	Q9C518	6e-79	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A2I4FV70	0.0	A0A2I4FV70_JUGRE; transcription factor TCP8-like
STRING	EOX97160	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	2e-65	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]