PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013187-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 333aa    MW: 37615.1 Da    PI: 7.9948
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013187-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.6e-05171190120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++Cp C k+F+r  n++ H+
  WALNUT_00013187-RA 171 FSCPLCFKTFNRYNNMQMHM 190
                         89*****************9 PP
2zf-C2H214.69.3e-05255277123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C +Cgk F  + + ++H +++
  WALNUT_00013187-RA 255 FMCRKCGKAFAVRGDWRTHEKNC 277
                         89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66171198IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-5171190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.61171193IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280173193IPR007087Zinc finger, C2H2
SuperFamilySSF576671.14E-6236275No hitNo description
Gene3DG3DSA:3.30.160.608.8E-6251275IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808255275IPR007087Zinc finger, C2H2
SMARTSM0035549255275IPR015880Zinc finger, C2H2-like
SMARTSM00355190281304IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MTDPSSNYFN GWFNLNSLQH FSSSASSNPS LYYSYDYFSN SINTTSFTNP GSSPPSPPLK  60
EALPLLSLSP TRYEEQESSC RAMEVDKNIK EKKESLLSST SAQDHEDTVA LALHLGLPSP  120
TSGDLITRFS STEISDKDEV TLASGYPSNR LNKGQYWIPT PAHILIGPTQ FSCPLCFKTF  180
NRYNNMQMHM WGHGSQYRKG PESLRGTQPT AMLRLPCYCC APGCRNNIDH PRSKPLKDFR  240
TLQTHYKRKH GIKPFMCRKC GKAFAVRGDW RTHEKNCGKL WYCTCGSDFK HKRSLKDHIK  300
AFGHGHAAYG IDCFEEEDEA ASEFELDNNE SSQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0956331e-159BT095633.1 Soybean clone JCVI-FLGm-19L21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018830897.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-140ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2I4FGY60.0A0A2I4FGY6_JUGRE; zinc finger protein WIP2-like
STRINGVIT_06s0004g01870.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-129C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]