PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013191-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NF-YB
Protein Properties Length: 254aa    MW: 27601.9 Da    PI: 4.9377
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013191-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB36.21.5e-112763339
               NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecv 39
                        e+d+flPian+s i+kk l an+kiskd  etvqec+
  WALNUT_00013191-RA 27 EHDQFLPIANMSWIVKKELLANTKISKDVAETVQECI 63
                        78**********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.5E-82763IPR009072Histone-fold
PROSITE profilePS510369.80980114IPR002653Zinc finger, A20-type
SMARTSM002592.6E-983107IPR002653Zinc finger, A20-type
PfamPF017548.7E-1384107IPR002653Zinc finger, A20-type
SuperFamilySSF577161.33E-1285121No hitNo description
Gene3DG3DSA:4.10.1110.106.9E-30179250IPR000058Zinc finger, AN1-type
SuperFamilySSF1183104.84E-29180249No hitNo description
PROSITE profilePS5103912.212192235IPR000058Zinc finger, AN1-type
PfamPF014281.2E-9195231IPR000058Zinc finger, AN1-type
SMARTSM001544.0E-16195232IPR000058Zinc finger, AN1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEDLDNEFEG DGERTGNASA NELSPWEHDQ FLPIANMSWI VKKELLANTK ISKDVAETVQ  60
ECIWRVEKMD HDETGCQAPP EGPILCVNNC GFFGSAATMN MCSKCHKDML LKQEQTKLAA  120
SSFGSIVNGS SSSNGNELVI ATVDVEVNSV EPKAISVQPS FSFGAGESSE AKPSSFSFGS  180
EENTEAKPKE GPKRCSSCNK RVGLTGFNCR CGDLFCAVHR YSDKHGCPFD YRTAARDAIA  240
KANPVIKAEK LDKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wfl_A1e-171812351468Zinc finger protein 216
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2240952e-59CU224095.1 Populus EST from leave.
GenBankCU2247822e-59CU224782.1 Populus EST from leave.
GenBankCU2248912e-59CU224891.1 Populus EST from leave.
GenBankCU2262062e-59CU226206.1 Populus EST from leave.
GenBankEF1445442e-59EF144544.1 Populus trichocarpa clone WS01110_F13 unknown mRNA.
GenBankEF1447542e-59EF144754.1 Populus trichocarpa clone WS01117_N21 unknown mRNA.
GenBankEF1456922e-59EF145692.1 Populus trichocarpa clone WS0112_K23 unknown mRNA.
GenBankEF1470292e-59EF147029.1 Populus trichocarpa clone WS01226_G20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018830900.11e-136PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8
RefseqXP_018830901.11e-136PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8
RefseqXP_018830902.11e-136PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8
SwissprotA2YEZ64e-79SAP8_ORYSI; Zinc finger A20 and AN1 domain-containing stress-associated protein 8
SwissprotA3BDI84e-79SAP8_ORYSJ; Zinc finger A20 and AN1 domain-containing stress-associated protein 8
TrEMBLA0A2I4FGZ01e-134A0A2I4FGZ0_JUGRE; zinc finger A20 and AN1 domain-containing stress-associated protein 8
STRINGPOPTR_0003s20450.17e-99(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47640.14e-12nuclear factor Y, subunit B2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]