PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00013243-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NAC

Protein Properties

Length: 119aa MW: 13337 Da PI: 10.3066

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00013243-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	91.2	1.8e-28	8	91	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel........vglkktLvfykgrapkgektdWvmheyrl 128 a+++e yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s+kg++ +glkktLv+y+g+a kg+ktdW+mhe+rl WALNUT_00013243-RA 8 AKDTEEYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKQVYSAKGSAdrhshhvcIGLKKTLVYYRGSAGKGTKTDWMMHEFRL 91 567899**********************************9444455566777*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	29.103	1	119	IPR003441	NAC domain
SuperFamily	SSF101941	3.27E-29	8	100	IPR003441	NAC domain
Pfam	PF02365	7.2E-13	13	91	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MEAAGSTAKD TEEYFFCKRG RKYRNSIRPN RVTGSGFWKA TGIDKQVYSA KGSADRHSHH 60 VCIGLKKTLV YYRGSAGKGT KTDWMMHEFR LPADHDTNTN LSNSKSTAPE AAILMKTFN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-23	10	103	70	156	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-23	10	103	70	156	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-23	10	103	70	156	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-23	10	103	70	156	NO APICAL MERISTEM PROTEIN
3swm_A	4e-23	10	103	73	159	NAC domain-containing protein 19
3swm_B	4e-23	10	103	73	159	NAC domain-containing protein 19
3swm_C	4e-23	10	103	73	159	NAC domain-containing protein 19
3swm_D	4e-23	10	103	73	159	NAC domain-containing protein 19
3swp_A	4e-23	10	103	73	159	NAC domain-containing protein 19
3swp_B	4e-23	10	103	73	159	NAC domain-containing protein 19
3swp_C	4e-23	10	103	73	159	NAC domain-containing protein 19
3swp_D	4e-23	10	103	73	159	NAC domain-containing protein 19
4dul_A	4e-23	10	103	70	156	NAC domain-containing protein 19
4dul_B	4e-23	10	103	70	156	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ618146	1e-164	JQ618146.1 Juglans mandshurica clone NS21 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018829953.1	2e-77	PREDICTED: transcription factor JUNGBRUNNEN 1-like, partial
Swissprot	Q9SK55	6e-39	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A2I4FE87	5e-76	A0A2I4FE87_JUGRE; transcription factor JUNGBRUNNEN 1-like
STRING	EOY13743	5e-48	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1013	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12910.1	1e-42	NAC family protein

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]