PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00013301-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

FAR1

Protein Properties

Length: 358aa MW: 40751.9 Da PI: 7.0874

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00013301-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	102.1	5.3e-32	83	170	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s ++s+r+g+i++r+ vCs+eg+r+e ++ +++r+r+ tr+gCka+++vkk+++gkw v+kl++eHnHel+p WALNUT_00013301-RA 83 FYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSREGFRREGAEN--RSKRQRTITRVGCKAQMTVKKQSSGKWAVSKLVKEHNHELVP 170 9***************************************9988..999***********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.4E-29	83	170	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MDIEPLSIEN EVMEFDMGGS VEDETTTLDL EHPDDDYERD YNDELVEGSN PSTSHGFLTS 60 DGDPNLEPYE GMEFDSEQAA RIFYNSYARR IGFSTRVSVY QRSRRDGSII CRQIVCSREG 120 FRREGAENRS KRQRTITRVG CKAQMTVKKQ SSGKWAVSKL VKEHNHELVP PDKVHCLRSH 180 RHVSGIICRH ILAVFRVMNV LTLPSHYILK RWTRNAKSGV LLDERTLGLP SDSQESSTAR 240 YDILQREAIK YVEEGAESMH IYNVAMNALH EAAKKVAAAK KQGSGVTTQS TLANTRQQLQ 300 SCSMYQDEKI LELTAELENA SQRCEAYRAK LFSVLKNMEE QQLQISVKVQ NVRLNLRG

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MDIEPLSIEN EVMEFDMGGS VEDETTTLDL EHPDDDYERD YNDELVEGSN PSTSHGFLTS  60
DGDPNLEPYE GMEFDSEQAA RIFYNSYARR IGFSTRVSVY QRSRRDGSII CRQIVCSREG  120
FRREGAENRS KRQRTITRVG CKAQMTVKKQ SSGKWAVSKL VKEHNHELVP PDKVHCLRSH  180
RHVSGIICRH ILAVFRVMNV LTLPSHYILK RWTRNAKSGV LLDERTLGLP SDSQESSTAR  240
YDILQREAIK YVEEGAESMH IYNVAMNALH EAAKKVAAAK KQGSGVTTQS TLANTRQQLQ  300
SCSMYQDEKI LELTAELENA SQRCEAYRAK LFSVLKNMEE QQLQISVKVQ NVRLNLRG

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018843064.1	1e-131	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_018843065.1	1e-131	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	1e-49	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2I4GGN9	1e-130	A0A2I4GGN9_JUGRE; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_004301609.1	1e-98	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-51	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]