PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013425-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 291aa    MW: 31724.7 Da    PI: 7.6165
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013425-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-10654347
                        SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47
                         W++eE++ + +a++++  +     +W+tIa++++  ++ +++k ++q +
  WALNUT_00013425-RA  6 VWSKEEEKAFENAIAMHWVDedskeHWETIASMVP-SKSMEELKQHYQVL 54
                        6**********************************.************86 PP
2Myb_DNA-binding391.9e-12131175347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  WALNUT_00013425-RA 131 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 175
                         7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.795159IPR017884SANT domain
SMARTSM007171.7E-7357IPR001005SANT/Myb domain
PfamPF002499.2E-8654IPR001005SANT/Myb domain
CDDcd001674.91E-9755No hitNo description
SuperFamilySSF466892.23E-9761IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-4754IPR009057Homeodomain-like
PROSITE profilePS5129416.873124180IPR017930Myb domain
SuperFamilySSF466896.96E-17126181IPR009057Homeodomain-like
SMARTSM007172.3E-10128178IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.0E-17128178IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.1E-11129174IPR009057Homeodomain-like
CDDcd001679.27E-10131176No hitNo description
PfamPF002497.0E-11131175IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MTSVVVWSKE EEKAFENAIA MHWVDEDSKE HWETIASMVP SKSMEELKQH YQVLVEDVRA  60
IEAGHIPLPN YLGEEASSSN KDCHGSSGAT ASDKRSNCGY GSGFSGLGHD STGHGGKGGS  120
RSEQERRKGI PWTEEEHRLF LLGLDKFGKG DWRSISRNFV ISRTPTQVAS HAQKYFIRLN  180
SMNRDRRRSS IHDITSVNNG DVTSHQAPIT GQQIHMNLSS VAAIGPPAKH RAPPHMPGLG  240
MYGMPVGHPV AAPPGHMASA VGTPVMLTPG PHPHPYVVPV AYPMAPPPMH Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-157711173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018825411.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotB8A9B21e-80MYBS1_ORYSI; Transcription factor MYBS1
SwissprotQ8LH591e-80MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBLA0A2I4F1860.0A0A2I4F186_JUGRE; transcription factor DIVARICATA-like
STRINGPOPTR_0012s05720.11e-161(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106943340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.13e-82MYB family protein
Publications ? help Back to Top
  1. Hong YF, et al.
    Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.
    Plant Cell, 2012. 24(7): p. 2857-73
    [PMID:22773748]