PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00013464-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

FAR1

Protein Properties

Length: 250aa MW: 28227.7 Da PI: 7.1995

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00013464-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89	6.4e-28	86	173	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn++A++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw vtk+++eH+H+l+p WALNUT_00013464-RA 86 FYNAFATRVGFVIRVSKLSRSRRDGSAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWIVTKFVKEHTHPLTP 173 9***************************************9988..9************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-25	86	173	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MAVEFGIDGN ANGEVVGSSA EVEDRRVGDE NETGGSSVEG AFQQDQDDKM NGIDVVPAAV 60 PSVSMVPADE PYVGQEFESE AAAHAFYNAF ATRVGFVIRV SKLSRSRRDG SAIGRALVCN 120 KEGYRMPDKR EKIVRQRAET RVGCRAMILV RKVSSGKWIV TKFVKEHTHP LTPGKGRRDC 180 IYDQFPNEHD KIRELSQQLS VEKKRAATYK RHLEMIFEHI EEHNESLSKK IQYIVDNVKE 240 METKEQQNQR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018839988.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 12-like isoform X1
TrEMBL	A0A2I4G7W2	0.0	A0A2I4G7W2_JUGRE; protein FAR1-RELATED SEQUENCE 12-like isoform X1
STRING	XP_010097543.1	1e-158	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-101	FAR1 family protein