PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013547-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family M-type_MADS
Protein Properties Length: 269aa    MW: 31000.5 Da    PI: 9.0683
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013547-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.21.7e-161150342
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                        i n+s r+ tf kR++g++KK +ELS+LC+++ + ii+ +
  WALNUT_00013547-RA 11 ITNDSARKATFKKRKKGLMKKMSELSTLCGIQTCAIIYCP 50
                        89***********************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.83E-21184IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.47148IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-22160IPR002100Transcription factor, MADS-box
CDDcd002669.17E-20285No hitNo description
PRINTSPR004045.6E-8323IPR002100Transcription factor, MADS-box
PfamPF003195.3E-171150IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MTRKKVKLAY ITNDSARKAT FKKRKKGLMK KMSELSTLCG IQTCAIIYCP YDSQPEVWPS  60
AMGVQRAIVR FKKMPEAEQS RKMVNQDIFL RQRISKAEEQ LKKQQRENRE KEMTQVMYRS  120
LVGDQGLQNL SVVDLKDLGW LVEKNIEEIE EKIKSLQAHQ MPPPQVVTVT SSHMISSTHD  180
LEKNDQAAKN TTDTAMDPTV QNQQWLTELL KPNDQNVGFG RNEDMMEPQN HQWLMDLLKS  240
NENVGFGKNE DMLPYGFNGN GLWSSFPFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYITNDSARKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018845153.10.0PREDICTED: agamous-like MADS-box protein AGL80
RefseqXP_018855303.10.0PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-56AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A2I4HGM70.0A0A2I4HGM7_JUGRE; agamous-like MADS-box protein AGL80
STRINGXP_010058573.16e-80(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.19e-56AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]