PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00013581-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Dof

Protein Properties

Length: 489aa MW: 53420.4 Da PI: 7.8344

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00013581-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.7	6.9e-40	133	193	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny++sqPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ss WALNUT_00013581-RA 133 PDKILPCPRCNSMDTKFCYYNNYNVSQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSS 193 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-30	130	190	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-32	135	191	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.984	137	191	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	139	175	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MSQDPTIIKL FGKTMTIPLP LEHETWATKL CGAEDFSDHN LRCFPTSSRE ENSGRESAKG 60 DKVPWGRELT GDKQEDCNSH EIKADSKDPT TSSGISENPK TPSFDRETSS LKAYKNGEQS 120 EASISQEKTL KKPDKILPCP RCNSMDTKFC YYNNYNVSQP RHFCKNCQRY WTAGGTMRNV 180 PVGAGRRKNK NSSSSHYRHL IVSEATQTAR VNGVHNSAWG KNGAVLTFGS NSPLCESMAS 240 VLSLAEKTQN PVQNGFLRPE QITLISGGDH GDDHSSGPSV TASNSTEKEG SAGLQESAVK 300 NYPGFPPQPP CFAGTPWPLQ WNSSHWGSVM SPPPLCPSGF PVSFYPAAPA NWGCTVPGSW 360 NVQCLSPPSS FHSHCGQISA PNFPILGKHS RDGKILNPEN SQQEETVKEQ SSERYVRIPK 420 TLRIDVSDEA VENSIGTIQG NEKINSVNGG LFKAFQSKGH DKSHVVETSR VLQANPAALS 480 RSLNFHEIA

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MSQDPTIIKL FGKTMTIPLP LEHETWATKL CGAEDFSDHN LRCFPTSSRE ENSGRESAKG  60
DKVPWGRELT GDKQEDCNSH EIKADSKDPT TSSGISENPK TPSFDRETSS LKAYKNGEQS  120
EASISQEKTL KKPDKILPCP RCNSMDTKFC YYNNYNVSQP RHFCKNCQRY WTAGGTMRNV  180
PVGAGRRKNK NSSSSHYRHL IVSEATQTAR VNGVHNSAWG KNGAVLTFGS NSPLCESMAS  240
VLSLAEKTQN PVQNGFLRPE QITLISGGDH GDDHSSGPSV TASNSTEKEG SAGLQESAVK  300
NYPGFPPQPP CFAGTPWPLQ WNSSHWGSVM SPPPLCPSGF PVSFYPAAPA NWGCTVPGSW  360
NVQCLSPPSS FHSHCGQISA PNFPILGKHS RDGKILNPEN SQQEETVKEQ SSERYVRIPK  420
TLRIDVSDEA VENSIGTIQG NEKINSVNGG LFKAFQSKGH DKSHVVETSR VLQANPAALS  480
RSLNFHEIA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018845240.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	A0A2I4GMW5	0.0	A0A2I4GMW5_JUGRE; cyclic dof factor 1-like
STRING	XP_008221604.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-86	cycling DOF factor 2