PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013629-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 353aa    MW: 40081.4 Da    PI: 4.7498
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013629-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.3e-20116166155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++++GVr+++ +g+W+AeIrdp+    r  r +lg+++taeeAa  +++a+ kl+g
  WALNUT_00013629-RA 116 KKFRGVRQRP-WGKWAAEIRDPT----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 166
                         59********.**********84....34*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.72E-33116173No hitNo description
PfamPF008475.1E-13117166IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-21117174IPR016177DNA-binding domain
SMARTSM003803.0E-39117180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-30117174IPR001471AP2/ERF domain
PROSITE profilePS5103223.644117174IPR001471AP2/ERF domain
PRINTSPR003673.9E-10118129IPR001471AP2/ERF domain
PRINTSPR003673.9E-10140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEQDQGILCP IKYTEHRNII KKLTKHRQVP DGHRKRQDEP NPPRVVRISV TDPDATDSSS  60
DEDHDFFGRQ RVKRYVEEIN IESGCKNNVV SKPRKRPAGE APACRRPLKV APSNGKKFRG  120
VRQRPWGKWA AEIRDPTRRV RLWLGTYDTA EEAAMVYDNA AIKLRGPDAL TNFVTPPKEK  180
PEINVPSVSS YDSGDESHCH GHSLSSPTSV LQYRTPSSEE VLPTEQHEKQ QEEQVGECKR  240
EIAMEEVFVE CQAETSLPDD SGIGVYLPFD LPYFDDVFNF SEPYLLFDEP ISNDTMMDEF  300
GLLFGENSNN ESLGSSSMMN QSLSQNQNQN QNQNQGDDYF QEILFGSDPL VVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21113173162ATERF1
3gcc_A1e-21113173162ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018847356.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A2I4GTY10.0A0A2I4GTY1_JUGRE; ethylene-responsive transcription factor CRF4-like
STRINGEOY234431e-113(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-66cytokinin response factor 4