PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013693-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TALE
Protein Properties Length: 177aa    MW: 20366.9 Da    PI: 7.7444
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013693-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.13.9e-101101442155
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         + +yp++ee+ +L++ +gL+++q+++WF N+R ++
  WALNUT_00013693-RA 110 RWPYPTEEEKSRLSEVTGLDQKQISNWFINQRKRH 144
                         469*****************************985 PP
2ELK27.95.4e-106485122
                 ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                        ELK+ LlrKYsgyL++L +EF+
  WALNUT_00013693-RA 64 ELKEKLLRKYSGYLSNLMKEFL 85
                        9********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011884.5E-56485IPR005539ELK domain
PROSITE profilePS5121310.4936484IPR005539ELK domain
PfamPF037892.1E-76485IPR005539ELK domain
PROSITE profilePS5007112.684147IPR001356Homeobox domain
SuperFamilySSF466895.13E-2086159IPR009057Homeodomain-like
SMARTSM003892.9E-1386151IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.9E-2789149IPR009057Homeodomain-like
CDDcd000862.54E-1296148No hitNo description
PfamPF059203.4E-17104143IPR008422Homeobox KN domain
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MLFVWISKPF SASHGTFLSF FRSFYVSLDE ATGTSGEELS YGEVDAAALE NQELSSTGPS  60
GDNELKEKLL RKYSGYLSNL MKEFLKKRKK GKLPKDATLA LMDWWNTHYR WPYPTEEEKS  120
RLSEVTGLDQ KQISNWFINQ RKRHWKPSED MRFALMDDVS SSAGGPIYFD PGDRTGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18589KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10488233}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021663046.14e-70homeobox protein knotted-1-like 1 isoform X1
RefseqXP_021663047.14e-70homeobox protein knotted-1-like 1 isoform X1
SwissprotA2Y0071e-51KNOSA_ORYSI; Homeobox protein knotted-1-like 10
SwissprotQ7GDL51e-51KNOSA_ORYSJ; Homeobox protein knotted-1-like 10
TrEMBLA0A2R6R1522e-69A0A2R6R152_ACTCH; Homeobox protein knotted-1-like
STRINGXP_010024132.11e-67(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.15e-37KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  2. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  3. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  4. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  5. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  6. Chu H, et al.
    A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice.
    J. Exp. Bot., 2013. 64(17): p. 5359-69
    [PMID:24043854]
  7. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  8. Coudert Y, et al.
    Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.
    New Phytol., 2015. 206(1): p. 243-54
    [PMID:25442012]
  9. Xu Y, et al.
    OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.
    Plant J., 2015. 83(5): p. 806-17
    [PMID:26121094]
  10. Kir G, et al.
    RNA Interference Knockdown of BRASSINOSTEROID INSENSITIVE1 in Maize Reveals Novel Functions for Brassinosteroid Signaling in Controlling Plant Architecture.
    Plant Physiol., 2015. 169(1): p. 826-39
    [PMID:26162429]