PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013742-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 232aa    MW: 27721.9 Da    PI: 6.1227
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013742-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00046158182123
                         EEETTTTEEESSHHHHHHHHHH..T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                         + C  C+k ++  ++++ H+++  H
  WALNUT_00013742-RA 158 FYCDLCNKQYKLAMEFEAHLSSydH 182
                         78*****************987666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004431.5E-1861106IPR000467G-patch domain
PROSITE profilePS5017416.76863108IPR000467G-patch domain
PfamPF015853.8E-1664104IPR000467G-patch domain
PfamPF121711.2E-5158185IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280160182IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDHQWFNGRQ EMSSRDRQQH EKEQDSVVED LSEDFRLPIN HRPTENVDLD NVEQASLDTQ  60
LTSSNIGFRL LQKMGWKGKG LGKNEQGITE PIKSGIRDPK LGVGKQEEDD FFTAEENIQR  120
RKLDVEVDET EEHAKKREVL AEREQKIQTE VKEIRKVFYC DLCNKQYKLA MEFEAHLSSY  180
DHNHRKRFKE MREMHGTSSR DDRQKREQQR QEREMAKFAQ MYQYTLSLSY IY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018816518.11e-165PREDICTED: G patch domain-containing protein 8 isoform X2
TrEMBLA0A2I4EAT91e-163A0A2I4EAT9_JUGRE; G patch domain-containing protein 8 isoform X2
STRINGXP_006480352.11e-144(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59772428