PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013759-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TCP
Protein Properties Length: 463aa    MW: 50177.9 Da    PI: 7.1855
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013759-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.69.3e-38762312134
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssas 71 
                          g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el+++                     +     
  WALNUT_00013759-RA  76 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAADAIAELPSLnssfpdtpkqlsdekrasggtE----- 161
                         689*************************************************************6544433333333222222220..... PP

                 TCP  72 eceaesssssasnsssg......................kaaksaakskksqksaasalnlak.esrakarararertrekmrikn 134
                                         +                       + +++a+s+ s++s+ s l+l++ e r kar+rarer ++++ ++n
  WALNUT_00013759-RA 162 ----------------QgfdsaeveldgdpnfqqnqsqlLSLSKSACSSTSETSKGSGLSLSRsEIRVKARERARERAAKEKEKEN 231
                         ................122334444555555555555667788888999999999999****9999**********8777766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.2E-4277229IPR005333Transcription factor, TCP
PROSITE profilePS5136931.34578136IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.138209227IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MEAEEIQQAP ACKFPRVGNG RNDSSKIGGS DHYPDEEEDG ELNRACNVVP GSDAGENANR  60
LRGWNHSRII RVSRASGGKD RHSKVWTSKG LRDRRVRLSV TTAIQFYDLQ DRLGYDQPSK  120
AVEWLIKAAA DAIAELPSLN SSFPDTPKQL SDEKRASGGT EQGFDSAEVE LDGDPNFQQN  180
QSQLLSLSKS ACSSTSETSK GSGLSLSRSE IRVKARERAR ERAAKEKEKE NDSRVAQNVN  240
HMSHNASFTE LLTGGISSVN NNGTSPTGST HQNPCGESNL FHKAAARQWT CSTPMDYVNS  300
GLLGPSSRAH HSSGFSGQSH LGNSIPQAMT MSVPTFNISG DNHSELQHFP FVPDHLIPVA  360
AATSQPGSGP VDYNLNFSIS SSGLAGYNRG TLQSNSPSFF PHLQRFSPID GPNVPFFMAS  420
TASASPPMEN HHHHQFSPGF DGRLQLYYGD GSRHSDQKGK GKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2483137155Putative transcription factor PCF6
5zkt_B5e-2483137155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4350471e-33AM435047.2 Vitis vinifera contig VV78X180421.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018847638.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_018847640.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_018847641.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_018847642.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_018847643.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_018847644.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_018847645.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_018847646.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_018847647.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_018847648.10.0PREDICTED: transcription factor TCP2-like
TrEMBLA0A2I4GUS80.0A0A2I4GUS8_JUGRE; transcription factor TCP2-like
STRINGEOY276510.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.26e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2