PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013808-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WRKY
Protein Properties Length: 164aa    MW: 18792.4 Da    PI: 4.8371
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013808-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.88.1e-32103161159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDg++WrKYG+K+vk+s++pr+YYrC+  gCpvkk+ver+++dpk+v++tYeg Hnh+
  WALNUT_00013808-RA 103 LDDGFKWRKYGKKMVKNSPNPRNYYRCSVDGCPVKKRVERDKDDPKYVITTYEGVHNHQ 161
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-3488161IPR003657WRKY domain
SuperFamilySSF1182901.02E-2896161IPR003657WRKY domain
PROSITE profilePS5081130.72298163IPR003657WRKY domain
SMARTSM007744.6E-37103162IPR003657WRKY domain
PfamPF031063.1E-25104161IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MSDTNSRPSD SNDRHYYAIE QPNFELSEFL MFEGWPEEDD AYNASVGPVD QNPVNQANEV  60
VLGESGSRSG SHIEEGSDSR DDGSGRERRE RVAFKTISEV EILDDGFKWR KYGKKMVKNS  120
PNPRNYYRCS VDGCPVKKRV ERDKDDPKYV ITTYEGVHNH QSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2693160774Probable WRKY transcription factor 4
2lex_A1e-2693160774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018825528.11e-120PREDICTED: probable WRKY transcription factor 50 isoform X1
SwissprotQ8VWQ53e-44WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLA0A2I4F1K11e-118A0A2I4F1K1_JUGRE; probable WRKY transcription factor 50 isoform X1
STRINGXP_006453040.11e-58(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.13e-44WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]