PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00013919-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

MYB_related

Protein Properties

Length: 92aa MW: 10392.9 Da PI: 9.3517

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00013919-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.5	2.7e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+d+ +++G+g +W + +++ g++R++k+c++rw++yl WALNUT_00013919-RA 14 KGPWSPEEDATLKDYLEKHGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62 79**********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.335	9	66	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.8E-21	12	61	IPR009057	Homeodomain-like
SMART	SM00717	3.3E-12	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	3.4E-16	14	62	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.9E-20	15	89	IPR009057	Homeodomain-like
CDD	cd00167	3.95E-9	16	62	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.5E-7	62	87	IPR009057	Homeodomain-like
PROSITE profile	PS50090	4.054	63	92	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MGRAPCCDKA NVKKGPWSPE EDATLKDYLE KHGTGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPDIRRGS FTEEEDKIIC TLYGSIGSRQ VN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-15	14	89	7	80	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269\|PubMed:16461581}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018834822.1	3e-61	PREDICTED: transcription factor RAX2-like
Swissprot	Q9SJL7	4e-53	RAX2_ARATH; Transcription factor RAX2
TrEMBL	A0A2I4FT60	7e-60	A0A2I4FT60_JUGRE; transcription factor RAX2-like
STRING	POPTR_0006s25060.1	2e-55	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF130	34	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	1e-55	MYB family protein

Publications ? help Back to Top
Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700]