PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013927-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family LBD
Protein Properties Length: 166aa    MW: 18414 Da    PI: 7.4216
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013927-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.91.7e-4361051100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG++g i+ lq+++++l+
  WALNUT_00013927-RA   6 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCAGAISYLQNEVSKLE 96 
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                          +la++++e
  WALNUT_00013927-RA  97 MQLAVAQAE 105
                         ****99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.7665106IPR004883Lateral organ boundaries, LOB
PfamPF031958.1E-436103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MGGPSPCASC KLLRRRCAKD CIFAPYFPSD DPHKFAIVHK VFGASNVSKM LQELPIHQRG  60
DAVSSLVYEA NARVRDPVYG CAGAISYLQN EVSKLEMQLA VAQAEILCIQ MQQQPNYLPT  120
NHIDVQAGEK SHLLSADFNN NMSQYLGFPS SSNVIQDPLK RESLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-4821207128LOB family transfactor Ramosa2.1
5ly0_B8e-4821207128LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3786261e-107FQ378626.1 Vitis vinifera clone SS0AEB13YA05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018819163.11e-123PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW33e-76LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A2I4EIE11e-121A0A2I4EIE1_JUGRE; LOB domain-containing protein 12-like
STRINGAquca_030_00227.14e-94(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16643497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.11e-78LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]